| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,091,435 – 18,091,553 |
| Length | 118 |
| Max. P | 0.954214 |
| Location | 18,091,435 – 18,091,553 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.34 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -23.95 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18091435 118 - 22224390 AGCUGUGAAAAUUCCUGGCAUCUUUAAUGAGCGCCGGCUUAUCAAUGGCCUCCGCCGUCAUCCGCUCCACAUCCCAUACCCAUGCC--GAUGCCCAUACCCAUAUCCAUUCGCAGUACCA .((((((((.......(((.((......))..)))(((......(((((....))))).(((.((..................)).--))))))..............)))))))).... ( -27.37) >DroEre_CAF1 10947 112 - 1 AGCUGUGAAAAUUCCUGGCAUCUUUAAUGAGCGCCGGCUUAUCAAUGGCCUCCGCCAUCAACAGCUCCACAUCCCAUACCCAU--------ACCCAUACCCAGAUCCAUUCGCAGUACCA .((((((((.......(((.((......))..)))((((.....(((((....)))))....)))).................--------.................)))))))).... ( -24.80) >DroYak_CAF1 12927 120 - 1 AGCUGUGAAAAUUCCUGGCAUCUUUAAUGAGCGCCGGCUUAUCAAUGGCCUCCGCCGUCAUCCGCUCCACAUCCCAUGCCCAUACACAUAUACCCAUACCCAUAUCCAUUCGCAGUACCA .((((((((.......(((((.......(((((.((((...............)))).....)))))........))))).(((....))).................)))))))).... ( -24.22) >consensus AGCUGUGAAAAUUCCUGGCAUCUUUAAUGAGCGCCGGCUUAUCAAUGGCCUCCGCCGUCAUCCGCUCCACAUCCCAUACCCAU_C____AUACCCAUACCCAUAUCCAUUCGCAGUACCA .((((((((.....(((((.((......))..))))).......(((((....)))))..................................................)))))))).... (-23.95 = -23.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:10 2006