| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,091,275 – 18,091,395 |
| Length | 120 |
| Max. P | 0.518102 |
| Location | 18,091,275 – 18,091,395 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.07 |
| Mean single sequence MFE | -38.63 |
| Consensus MFE | -37.11 |
| Energy contribution | -36.67 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18091275 120 - 22224390 UAACCUUUGAAUCGGGGCAUUAAAAAACGUUAACAAGCUGCGUAGCGCCGUCGGCGGCGUUAAUGUCGAAAUUGGCGCUGGCCCAGGAAUGGCCAAGAUCGGUGAACUGGAGGUGGAGGA ...(((..(..((((..(((......((((((((..(((....)))((((....))))))))))))(((..(((((.(...(....)...))))))..))))))..))))...)..))). ( -40.10) >DroEre_CAF1 10806 113 - 1 UAACCUUUGAAUCGGGGCAUUAAAAAACGUUAACAAGCUGCGUAGCGCCGUCGGCGGCGUUAAUGUCGAAAUUGGCGCUGGCCCAGGAAUGGCCAAGAUCGGUGAACCGACG-------A ...........((((..(((......((((((((..(((....)))((((....))))))))))))(((..(((((.(...(....)...))))))..))))))..))))..-------. ( -37.50) >DroYak_CAF1 12773 114 - 1 UAACCUUUGAAUCGGGGCAUUAAAAAACGUUAACAAGCUGCGUAGCGCCGUCGGCGGCGUUAAUGUCGAAAUUGGCGCUGGCCCAGGAAUGGCCAAGAUCGGUGAACCGAAG------CA .......((..((((..(((......((((((((..(((....)))((((....))))))))))))(((..(((((.(...(....)...))))))..))))))..))))..------)) ( -38.30) >consensus UAACCUUUGAAUCGGGGCAUUAAAAAACGUUAACAAGCUGCGUAGCGCCGUCGGCGGCGUUAAUGUCGAAAUUGGCGCUGGCCCAGGAAUGGCCAAGAUCGGUGAACCGAAG_______A ...........((((..(((......((((((((..(((....)))((((....))))))))))))(((..(((((.(...(....)...))))))..))))))..)))).......... (-37.11 = -36.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:10 2006