Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,986,716 – 1,986,875 |
Length | 159 |
Max. P | 0.854686 |
Location | 1,986,716 – 1,986,836 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.64 |
Mean single sequence MFE | -45.58 |
Consensus MFE | -40.54 |
Energy contribution | -42.23 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.34 |
Structure conservation index | 0.89 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1986716 120 + 22224390 GCACCGUCUGGGGCGAUUGAUUGUGGUUUGUGGGAAUGCAGGUCGCGUAAUUUCCGCCAGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUUUGAGUCGUGGUGGUAAGCAUCU (((((..(..((((((.(((((((((((.((((((.(((.((.((.(......))))).)))..))))))..))))).)))))).))))))(((.......)))..)..)))..)).... ( -43.10) >DroSec_CAF1 20254 120 + 1 GCACCGUUUGGGGCGAUUGGUUGUGAUUCGUGGGAAUGCAGGUGGCGUAAUUUCCGCCAGCGAAUCCCGCUUGACCACCGAUCAUUUGCUUGGCAUUUUGAGUAGUGGUGGUAAGCAUCU ((.((.....))))(((((((.((.(...((((((.(((.(((((........))))).)))..)))))).).)).)))))))...((((((.((((.........)))).))))))... ( -43.70) >DroEre_CAF1 9846 120 + 1 GCACCGUCUGGGGCGAUUGGUUGUGGUUUGUGGGAAUGCAAGUGGCAUAAUUGCCGCCGGCGAAUCCCGCUUGGCCUCCGAUCAUUUGCUUGGCGUUUUGCGUCGUGGUGGUAAGCAUCU (((((..(..((((((.((((((.((((.((((((.(((..((((((....))))))..)))..))))))..))))..)))))).))))))((((.....))))..)..)))..)).... ( -51.20) >DroYak_CAF1 20568 120 + 1 GCACCGUCUGGGGCGAUUGGUUGUGGUUCGUGGGAAUACAUGUGGCGUAAUUGCCGCCGGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUCUGAGUCGUGGUGGUAAGCAUCU (((((..(..((((((.(((((((((((.((((((......((((((....)))))).......))))))..))))).)))))).))))))(((.......)))..)..)))..)).... ( -44.32) >consensus GCACCGUCUGGGGCGAUUGGUUGUGGUUCGUGGGAAUGCAGGUGGCGUAAUUGCCGCCAGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUUUGAGUCGUGGUGGUAAGCAUCU .(((((....((((((.(((((((((((.((((((.(((.(((((((....))))))).)))..))))))..))))).)))))).))))))(((.......))).))))).......... (-40.54 = -42.23 + 1.69)
Location | 1,986,756 – 1,986,875 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -51.55 |
Consensus MFE | -41.31 |
Energy contribution | -43.38 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.90 |
Structure conservation index | 0.80 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1986756 119 + 22224390 GGUCGCGUAAUUUCCGCCAGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUUUGAGUCGUGGUGGUAAGCAUCUGGG-GGCCGUUGCCUUGGAAUGGCUUGCCGGCGGUGAUCA (((((((......)((((.((((.(((((((((.((((((.(((..(((...)))...)))....)))))))))))....)))-)((((((.(....))))))))))).)))))))))). ( -47.20) >DroSec_CAF1 20294 119 + 1 GGUGGCGUAAUUUCCGCCAGCGAAUCCCGCUUGACCACCGAUCAUUUGCUUGGCAUUUUGAGUAGUGGUGGUAAGCAUCUGGG-GGCCGUUGCCCUGGAACGGCUUGCCGGCGGUGAUCA (.(((((.......))))).)((.(((((((..(((((...(((..(((...)))...)))...)))))(((((((.((..((-(.......)))..))...)))))))))))).)))). ( -51.20) >DroEre_CAF1 9886 119 + 1 AGUGGCAUAAUUGCCGCCGGCGAAUCCCGCUUGGCCUCCGAUCAUUUGCUUGGCGUUUUGCGUCGUGGUGGUAAGCAUCUGGG-UGCCGUUGCCUUGGAAGGGCUUACCGGCAGUGAUCA ...((((....))))(((((((.....))).))))....(((((((.(((.((((.....)))).....(((((((.((..((-.((....))))..))...))))))))))))))))). ( -49.70) >DroYak_CAF1 20608 120 + 1 UGUGGCGUAAUUGCCGCCGGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUCUGAGUCGUGGUGGUAAGCAUCUGGGGGGCCGUUGCCCUGGAAGGGCUUGCCGGCGGUGAUCA .........((..((((((((((..((((((((.((((((.(((..(((...)))...)))....))))))))))).((..(((........)))..)).))).))))))))))..)).. ( -58.10) >consensus GGUGGCGUAAUUGCCGCCAGCGAAUCCCGCUUGGCCACCGAUCAUUUGCUUGGCGUUUUGAGUCGUGGUGGUAAGCAUCUGGG_GGCCGUUGCCCUGGAAGGGCUUGCCGGCGGUGAUCA .........((((((((((((((..(((((((.(((((((.(((..(((...)))...)))....)))))))))))....)))..((((((.(....))))))))))))))))))))).. (-41.31 = -43.38 + 2.06)
Location | 1,986,756 – 1,986,875 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -35.29 |
Energy contribution | -34.73 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1986756 119 - 22224390 UGAUCACCGCCGGCAAGCCAUUCCAAGGCAACGGCC-CCCAGAUGCUUACCACCACGACUCAAAACGCCAAGCAAAUGAUCGGUGGCCAAGCGGGAUUCGCUGGCGGAAAUUACGCGACC ((((..((((((((..(((.......)))...((..-(((....((((.(((((..((.(((....((...))...))))))))))..)))))))..))))))))))..))))....... ( -38.10) >DroSec_CAF1 20294 119 - 1 UGAUCACCGCCGGCAAGCCGUUCCAGGGCAACGGCC-CCCAGAUGCUUACCACCACUACUCAAAAUGCCAAGCAAAUGAUCGGUGGUCAAGCGGGAUUCGCUGGCGGAAAUUACGCCACC ((((..((((((((..(((((((....).)))))).-(((....((((((((((.....(((...(((...)))..)))..)))))).)))))))....))))))))..))))....... ( -45.10) >DroEre_CAF1 9886 119 - 1 UGAUCACUGCCGGUAAGCCCUUCCAAGGCAACGGCA-CCCAGAUGCUUACCACCACGACGCAAAACGCCAAGCAAAUGAUCGGAGGCCAAGCGGGAUUCGCCGGCGGCAAUUAUGCCACU ........(((((..(((((......(....)(((.-.((.(((((((..(.....)..((.....)).))))).....))))..)))....))).))..)))))((((....))))... ( -36.20) >DroYak_CAF1 20608 120 - 1 UGAUCACCGCCGGCAAGCCCUUCCAGGGCAACGGCCCCCCAGAUGCUUACCACCACGACUCAGAACGCCAAGCAAAUGAUCGGUGGCCAAGCGGGAUUCGCCGGCGGCAAUUACGCCACA ((((..((((((((...(((.....((((....)))).......((((.(((((..((.(((....((...))...))))))))))..)))))))....))))))))..))))....... ( -45.50) >consensus UGAUCACCGCCGGCAAGCCCUUCCAAGGCAACGGCC_CCCAGAUGCUUACCACCACGACUCAAAACGCCAAGCAAAUGAUCGGUGGCCAAGCGGGAUUCGCCGGCGGAAAUUACGCCACC ((((..((((((((..(((.......)))...((((.((((..(((((.....................)))))..))...)).))))...........))))))))..))))....... (-35.29 = -34.73 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:10 2006