Locus 7246

Sequence ID X_DroMel_CAF1
Location 18,086,714 – 18,086,826
Length 112
Max. P 0.537245
window11862

overview

Window 2

Location 18,086,714 – 18,086,826
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.03
Mean single sequence MFE -33.63
Consensus MFE -27.02
Energy contribution -27.62
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.80
SVM decision value 0.01
SVM RNA-class probability 0.537245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18086714 112 - 22224390
AUUAGGAAACGAUGAGUGCGCCGCGUUUAUUUUUGGCACAACGCC--------UCGCUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCCUAGUGCCAAGCUCCAAGUCCCAAGCAC
....(((...(((((((((...)))))))))((((((((......--------..((...((((((((((....))))))))))..)).......)))))))).)))............. ( -32.76)
>DroSec_CAF1 9074 108 - 1
AUUAGGAAACGAUGAGUGCGCCGGGUUUAUUUUUGGCACAACGCC--------UCGAUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCCUAGUGCCAAGUGCCAAGUCCCAG----
....((..((.....))...))(((......((((((((...((.--------.......((((((((((....))))))))))..((((...))))))...)))))))).)))..---- ( -33.80)
>DroSim_CAF1 9041 108 - 1
AUUAGGAAACGAUGAGUGCGCCGGGUUUAUUUUUGGCACAACGCC--------UCGCUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCCUAGUGCCAAGUGCCAAGUCCCAA----
....((..((.....))...))(((......((((((((...(((--------(.((...((((((((((....))))))))))..))......)).))...)))))))).)))..---- ( -35.00)
>DroEre_CAF1 6747 106 - 1
AUUAGGAAACGAUGAGUGCGCCGGGUUUAUUUUUGGCACAACGCC--------CCGCUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCAUAGUCCC-UGCCCCAUGCCCC-U----
....(....).(((.(.(.((.(((.((((....(((.....)))--------..((...((((((((((....))))))))))..))....)))).)))-.))))))).....-.---- ( -30.70)
>DroYak_CAF1 7770 110 - 1
AUUAGGAAACGAUGAGUGCGCCGGGUUUAUUUUUGGCACAACGCCAAAAUACAACGCUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCCUAGUCC-----UCCAGACCUC-C----
....(....)...(((..(...((((....(((((((.....)))))))......((...((((((((((....))))))))))..)).))))..)..)-----))........-.---- ( -35.90)
>consensus
AUUAGGAAACGAUGAGUGCGCCGGGUUUAUUUUUGGCACAACGCC________UCGCUUUGCCAUGGUUAUAAUUGGCCAUGGUCUGCUACCCUAGUGCCAAGCGCCAAGUCCCAA____
((((((..........((.((((((......)))))).))...............((...((((((((((....))))))))))..))...))))))....................... (-27.02 = -27.62 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:04 2006