| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,085,972 – 18,086,092 |
| Length | 120 |
| Max. P | 0.699751 |
| Location | 18,085,972 – 18,086,092 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.74 |
| Mean single sequence MFE | -34.31 |
| Consensus MFE | -24.88 |
| Energy contribution | -25.20 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18085972 120 - 22224390 AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGCCUGGGGUCCCCCCUCCCCCCCCCUCCUCGUGCUCCUCCUCCUGGCAGAUGCUACUCCAUUCGAUCCAUUGGGAUGGU ............(((((((((((.(((((.....)))))..))..((((........))))........................)))))))))....((((((.(.....).)))))). ( -31.40) >DroSec_CAF1 8372 116 - 1 AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGCAUGGGGUCCCCC----ACCCCACUCCUCGUGCUCCUCCUCCUGGCAGAUGCUACUCCAUUCGAUCCAUUGGGAUGGU ............(((((((((...(((((.....)))))..((((((((......----........))))))))..........)))))))))....((((((.(.....).)))))). ( -34.74) >DroSim_CAF1 8147 116 - 1 AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGCCUGGGGUCUCCC----ACCCCACUCCUCGUGCUCCUCCUCCUGGCAGAUGCUACUCCAUUCGAUCCAUUGGGAUGGU ............(((((((((((.(((((.....)))))..)).((((((.....----))))))....................)))))))))....((((((.(.....).)))))). ( -33.60) >DroEre_CAF1 6008 104 - 1 AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGCCUGGCAUCCCCC-------------CGCCUGG---UCCUCCUGGCAGAUGCUACUCCAUCCGAUCCAUGGGGAUGGA ..((.((((.(((....))))))).))((((((.((((...(((.(((.......-------------.))).))---).....))))))))))...(((((((.........))))))) ( -35.40) >DroYak_CAF1 6998 104 - 1 AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGGGCGGGGUCCCUC-------------CUCUUGG---UCCUCCUGGCAGAUGCUACUCCAUUCAAUCCAUUGCAAUGGA ..((((((((((((....)).))..((((((((.((((((((((.((((...)))-------------).)))))---).....))))))))))))..............)))))))).. ( -36.40) >consensus AACAUUGUAAGCGCAUUUGCUGCAUUGGCAUCUUGUCAACCGCCUGGGGUCCCCC_____CCCC_CUCCUCGUGCUCCUCCUCCUGGCAGAUGCUACUCCAUUCGAUCCAUUGGGAUGGU ............(((((((((((.(((((.....)))))..))..(((....)))..............................)))))))))....((((((.(.....).)))))). (-24.88 = -25.20 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:03 2006