Locus 7241

Sequence ID X_DroMel_CAF1
Location 18,084,463 – 18,084,583
Length 120
Max. P 0.924188
window11850

overview

Window 0

Location 18,084,463 – 18,084,583
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -38.96
Consensus MFE -36.06
Energy contribution -36.70
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.93
SVM decision value 1.16
SVM RNA-class probability 0.924188
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18084463 120 + 22224390
ACGCAUCCACUUGAUUUACAUACGAGCGGGAAUGGCAACGGCAACGGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCUCGCCUGCAU
..((((((.((((.........)))).)))...(((...(.(((.(....).))).).........((((((((..((..(((.........)))..))..))))))))...)))))).. ( -38.90)
>DroSec_CAF1 6912 120 + 1
ACGCAUCCACUUGAUUUACAUACGAGCGGGAAUGGCAACGGCAACGGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCUCGCCUGCAU
..((((((.((((.........)))).)))...(((...(.(((.(....).))).).........((((((((..((..(((.........)))..))..))))))))...)))))).. ( -38.90)
>DroSim_CAF1 6687 120 + 1
ACGCAUCCACUUGAUUUACAUACGAGCGGGAAUGGCAACGGCAACGGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCUCGCCUGCAU
..((((((.((((.........)))).)))...(((...(.(((.(....).))).).........((((((((..((..(((.........)))..))..))))))))...)))))).. ( -38.90)
>DroEre_CAF1 4564 120 + 1
ACGCGUCCACUUGAUUUACAUACGAGAGGGAAUGGCAACGGCAACGGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCGUGCCUGCAU
..((.(((.((((.........))))..)))..((((.(((((.(((((......(((.......)))..(((((.((((..........))))))).)).)))))))))))))).)).. ( -40.10)
>DroYak_CAF1 5535 114 + 1
ACGCAUCCACUUGAUUUACAUACGAGCGGGAAUGGCAAC------GGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCUUGCCUGCAU
..((((((.((((.........)))).)))...(((((.------(((.......(((.......)))((((((..((..(((.........)))..))..))))))))))))))))).. ( -38.00)
>consensus
ACGCAUCCACUUGAUUUACAUACGAGCGGGAAUGGCAACGGCAACGGCAACUUUGGCUCAUAAAAAGCGCGGCGGAGUUGGGUCUUAAAACAACCUGACCAUGUCGUGCCUCGCCUGCAU
..((((((.((((.........)))).)))...(((...(.(((.(....).))).).........((((((((..((..(((.........)))..))..))))))))...)))))).. (-36.06 = -36.70 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:54 2006