Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,986,408 – 1,986,528 |
Length | 120 |
Max. P | 0.967192 |
Location | 1,986,408 – 1,986,528 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -48.03 |
Consensus MFE | -40.53 |
Energy contribution | -40.77 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.84 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1986408 120 + 22224390 UUGCUGAACCUGCUGCACCUGCUGGGUCUGUGUUGACCCAGUAGAUCCAGGACCCGUCGCCGCCUGGACCGCGCUACUGGUGGUAGUCACUUUCUGAACCACUUUCUGGGCCAGCUUGCC ..((((..((.((.((..((((((((((......)))))))))).((((((.(........)))))))..))))....((((((..(((.....)))))))))....))..))))..... ( -47.90) >DroSec_CAF1 19946 120 + 1 UUGCUGAACCUGCUGCACCUGCUGGGUCUGUGUGGACCCAGCGGAUCCAGGACCCGUCGCCGCCUGGACCGCGCUACUGGUGGUAGUCACCUUCUGAACCACUUUCUGGGCCAGCUUGCC ..((((..((.((.((....(((((((((....)))))))))((.((((((.(........)))))))))))))....((((((..(((.....)))))))))....))..))))..... ( -50.00) >DroEre_CAF1 9538 120 + 1 UUGCUGAACCUGCUGCACCUGCUGGGUCUGUGUAGACCCAGUGGAUCCAGGACCCGUCGCCGCCUGGACUGCGCUACUGGUGGUGGUCACCUUCUGAACCACUUUCUGGGCCAGCUUGCC ..((((..((.((.(((.(..((((((((....))))))))..).((((((.(........))))))).)))))....((.((((((((.....)).)))))).)).))..))))..... ( -48.20) >DroYak_CAF1 20269 111 + 1 UUGCUGAACCU---------GCUGGGUCUGUGUCGACCCAGUGGAUCCAGGACCCGUCGCCGCCUGUACUGCGCUACUGGUGGUGGUCACCUUCUGAACCACUUUCUGGGUCAGCUUGCC ..(((((..(.---------.(((((((......)))))))..).(((((((......((((((.(((......))).))))))(((((.....)).)))...))))))))))))..... ( -46.00) >consensus UUGCUGAACCUGCUGCACCUGCUGGGUCUGUGUAGACCCAGUGGAUCCAGGACCCGUCGCCGCCUGGACCGCGCUACUGGUGGUAGUCACCUUCUGAACCACUUUCUGGGCCAGCUUGCC ..((((............((((((((((......)))))))))).((((((.(........)))))))..((.(....((((((..(((.....)))))))))....).))))))..... (-40.53 = -40.77 + 0.25)
Location | 1,986,408 – 1,986,528 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -51.40 |
Consensus MFE | -42.96 |
Energy contribution | -45.02 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.73 |
Structure conservation index | 0.84 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1986408 120 - 22224390 GGCAAGCUGGCCCAGAAAGUGGUUCAGAAAGUGACUACCACCAGUAGCGCGGUCCAGGCGGCGACGGGUCCUGGAUCUACUGGGUCAACACAGACCCAGCAGGUGCAGCAGGUUCAGCAA .....((((..((.....((((((((.....)))..)))))..((.((((((((((((((....))...))))))))..(((((((......)))))))...)))).)).))..)))).. ( -52.90) >DroSec_CAF1 19946 120 - 1 GGCAAGCUGGCCCAGAAAGUGGUUCAGAAGGUGACUACCACCAGUAGCGCGGUCCAGGCGGCGACGGGUCCUGGAUCCGCUGGGUCCACACAGACCCAGCAGGUGCAGCAGGUUCAGCAA .....((((..((.....(((((.....((....)))))))..((.((((((((((((((....))...)))))))).((((((((......))))))))..)))).)).))..)))).. ( -58.10) >DroEre_CAF1 9538 120 - 1 GGCAAGCUGGCCCAGAAAGUGGUUCAGAAGGUGACCACCACCAGUAGCGCAGUCCAGGCGGCGACGGGUCCUGGAUCCACUGGGUCUACACAGACCCAGCAGGUGCAGCAGGUUCAGCAA .....((((..((.....((((((........)))))).....((.((((.(((((((((....))...)))))))...((((((((....))))))))...)))).)).))..)))).. ( -50.90) >DroYak_CAF1 20269 111 - 1 GGCAAGCUGACCCAGAAAGUGGUUCAGAAGGUGACCACCACCAGUAGCGCAGUACAGGCGGCGACGGGUCCUGGAUCCACUGGGUCGACACAGACCCAGC---------AGGUUCAGCAA .....(((((.((....((((((((((..(((....)))(((.....(((.((....)).)))...))).))))).)))))(((((......)))))...---------.)).))))).. ( -43.70) >consensus GGCAAGCUGGCCCAGAAAGUGGUUCAGAAGGUGACCACCACCAGUAGCGCAGUCCAGGCGGCGACGGGUCCUGGAUCCACUGGGUCAACACAGACCCAGCAGGUGCAGCAGGUUCAGCAA .....(((((.((.....((((((((.....)))..)))))..((.((((((((((((((....))...))))))))..(((((((......)))))))...)))).)).)).))))).. (-42.96 = -45.02 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:07 2006