Locus 7237

Sequence ID X_DroMel_CAF1
Location 18,080,464 – 18,080,575
Length 111
Max. P 0.597907
window11844

overview

Window 4

Location 18,080,464 – 18,080,575
Length 111
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -30.27
Consensus MFE -19.38
Energy contribution -19.17
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.597907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18080464 111 + 22224390
AACUUUCCAUUGCCCCA--AAAUCUGACAGGUAAUUAGAUCAUCUGACCAAAGCAAAGGCAACUGACGCACAUUGCCGUUAGCUGGCCAUCGAACU-------GGGAAUGGAUUCUCCCA
.....((((((.(((..--..........(((...(((.....))))))........(((..(((((((.....).))))))...)))........-------)))))))))........ ( -26.50)
>DroEre_CAF1 1412 118 + 1
AUCUUUCCAUGGCCCCA--AAAUCUAACCCGUAAUUAGAUCAUCUGCCCAAAGUGAAGGCAACUGACGCACUUUGCUGUUGGCCGGCCACCGAACUGGGAACUGUGAAUGGACUUCUCCA
...((((((((((((((--(.((((((.......))))))........(((((((.((....))....)))))))...))))..)))))......)))))).......((((....)))) ( -30.00)
>DroYak_CAF1 1270 114 + 1
AACUUUCCAUUGUCCAAAAAAAUCUGAUCGGUAAUUAGAUCAUUUGCCGAAAGCAAUGGCUACUGACGCACAUUACUGUUAGCUGGCCAUCGAAUUU------GGGAAUGGAUUCUCCCA
.....((((((.((((((.........(((((((.........)))))))...(.(((((((((((((........)))))).))))))).)..)))------)))))))))........ ( -34.30)
>consensus
AACUUUCCAUUGCCCCA__AAAUCUGACCGGUAAUUAGAUCAUCUGCCCAAAGCAAAGGCAACUGACGCACAUUGCUGUUAGCUGGCCAUCGAACU_______GGGAAUGGAUUCUCCCA
.....((((((.(((......((((((.......)))))).................(((..((((((........))))))...)))...............)))))))))........ (-19.38 = -19.17 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:49 2006