Locus 7236

Sequence ID X_DroMel_CAF1
Location 18,079,613 – 18,079,715
Length 102
Max. P 0.854193
window11842 window11843

overview

Window 2

Location 18,079,613 – 18,079,715
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.99
Mean single sequence MFE -18.16
Consensus MFE -15.12
Energy contribution -14.90
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.43
Structure conservation index 0.83
SVM decision value 0.39
SVM RNA-class probability 0.715819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18079613 102 + 22224390
CAAUCAUAUUUAUAUUUCAUCAAUUACGUAUGUAGUUGGGCGUCAGCCACCCCACCUGAACUCCACCACCUUC------------------AGCUACACCGCCAGUGGCUCCCACACACA
...............((((.(((((((....)))))))(((....)))........)))).............------------------((((((.......)))))).......... ( -17.90)
>DroSim_CAF1 1716 102 + 1
CAAUCAUAUUUAUAUUUCAUCAAUUACGUAUGUAGUUGGGCGUCAGCCACCCCACCUGAACUCCACUACCUCC------------------AGCUACGCCGCCAGUGGCUCCCACACACA
....................(((((((....)))))))(((((.(((.........((.....))........------------------.))))))))....((((...))))..... ( -19.37)
>DroEre_CAF1 634 117 + 1
CCAUCAUAUUUAUAUAUAAUCAAUUGCGUAUGUAGUUGGGCGUCAGCCACCCCACCUGAACUCCACCUCCCCCACCGCCUCCACCGCCUCCACCGC---CGCCAGUGGCUCCCACACACA
....................(((((((....)))))))((((((((.........)))).................((.......))......)))---)....((((...))))..... ( -17.20)
>consensus
CAAUCAUAUUUAUAUUUCAUCAAUUACGUAUGUAGUUGGGCGUCAGCCACCCCACCUGAACUCCACCACCUCC__________________AGCUAC_CCGCCAGUGGCUCCCACACACA
...(((..............(((((((....)))))))(((....)))........))).............................................((((...))))..... (-15.12 = -14.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 18,079,613 – 18,079,715
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -33.50
Consensus MFE -26.13
Energy contribution -26.24
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 0.80
SVM RNA-class probability 0.854193
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18079613 102 - 22224390
UGUGUGUGGGAGCCACUGGCGGUGUAGCU------------------GAAGGUGGUGGAGUUCAGGUGGGGUGGCUGACGCCCAACUACAUACGUAAUUGAUGAAAUAUAAAUAUGAUUG
.((((((((..((((((..(((.....))------------------)..))))))............(((((.....)))))..))))))))........................... ( -33.00)
>DroSim_CAF1 1716 102 - 1
UGUGUGUGGGAGCCACUGGCGGCGUAGCU------------------GGAGGUAGUGGAGUUCAGGUGGGGUGGCUGACGCCCAACUACAUACGUAAUUGAUGAAAUAUAAAUAUGAUUG
.((((((((..(((.(..((......)).------------------.).)))...............(((((.....)))))..))))))))........................... ( -30.20)
>DroEre_CAF1 634 117 - 1
UGUGUGUGGGAGCCACUGGCG---GCGGUGGAGGCGGUGGAGGCGGUGGGGGAGGUGGAGUUCAGGUGGGGUGGCUGACGCCCAACUACAUACGCAAUUGAUUAUAUAUAAAUAUGAUGG
((((((((....((((((.(.---.((.((....)).))..).))))))...............(((.(((((.....))))).))).))))))))....(((((((....))))))).. ( -37.30)
>consensus
UGUGUGUGGGAGCCACUGGCGG_GUAGCU__________________GGAGGUGGUGGAGUUCAGGUGGGGUGGCUGACGCCCAACUACAUACGUAAUUGAUGAAAUAUAAAUAUGAUUG
.((((((((((.((((((.(..............................).))))))...)).....(((((.....)))))..))))))))........................... (-26.13 = -26.24 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:48 2006