Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,078,090 – 18,078,210 |
Length | 120 |
Max. P | 0.991291 |
Location | 18,078,090 – 18,078,210 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -32.71 |
Energy contribution | -33.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.86 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.605024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18078090 120 + 22224390 GAUCAGCUGGCCAAGGCCAUAAACACUAAUUGGUCGGUUAUCGGGAUAUUGGAAAGUUCUGCUUGAACGCAAUGCGAUGAUUAAUGCUCUACGAUCUUGGCCAACGAAAGUUGCUAGUGU ....(((.(((((((((((...........)))))((((((((...(((((....((((.....)))).)))))))))))))..............))))))(((....))))))..... ( -33.80) >DroSec_CAF1 163 120 + 1 GAUCAGCUGGCCAAGGCCAUAAACACUAAUUGGGCGGUAAUCGAGAUAUUGGAAAGUUCUGCUUGAACGCGAUGUGAUGAUUAAUGCACUACGAUCUUGGCCAGCGAAAGUUGCUGGUGU .((((((.(((((((((((...........)))(((.((((((..((((((....((((.....)))).))))))..)))))).))).......))))))))(((....))))))))).. ( -42.00) >DroSim_CAF1 195 120 + 1 GAUCAGCUGGCCAAGGCCAUAAACACUAAUUGGGCGGUAAUCGAGAUAUUGGAAAGUUCUGCUUGAACGCGAUGUGAUGAUUAAUGCACUACGAUCUUGGCCAGCGAAAGUUGCUAGUGU .....((((((((((((((...........)))(((.((((((..((((((....((((.....)))).))))))..)))))).))).......)))))))))))............... ( -38.90) >consensus GAUCAGCUGGCCAAGGCCAUAAACACUAAUUGGGCGGUAAUCGAGAUAUUGGAAAGUUCUGCUUGAACGCGAUGUGAUGAUUAAUGCACUACGAUCUUGGCCAGCGAAAGUUGCUAGUGU ....(((.(((((((((((...........)))(((.((((((..((((((....((((.....)))).))))))..)))))).))).......))))))))(((....))))))..... (-32.71 = -33.27 + 0.56)
Location | 18,078,090 – 18,078,210 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -33.82 |
Energy contribution | -33.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.87 |
Structure conservation index | 0.99 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18078090 120 - 22224390 ACACUAGCAACUUUCGUUGGCCAAGAUCGUAGAGCAUUAAUCAUCGCAUUGCGUUCAAGCAGAACUUUCCAAUAUCCCGAUAACCGACCAAUUAGUGUUUAUGGCCUUGGCCAGCUGAUC ...............((((((((((..((((((.(((((((..(((..((((......))))..........(((....)))..)))...)))))))))))))..))))))))))..... ( -34.50) >DroSec_CAF1 163 120 - 1 ACACCAGCAACUUUCGCUGGCCAAGAUCGUAGUGCAUUAAUCAUCACAUCGCGUUCAAGCAGAACUUUCCAAUAUCUCGAUUACCGCCCAAUUAGUGUUUAUGGCCUUGGCCAGCUGAUC ...............((((((((((..(((((.((((((((...........((((.....))))............((.....))....)))))))))))))..))))))))))..... ( -34.10) >DroSim_CAF1 195 120 - 1 ACACUAGCAACUUUCGCUGGCCAAGAUCGUAGUGCAUUAAUCAUCACAUCGCGUUCAAGCAGAACUUUCCAAUAUCUCGAUUACCGCCCAAUUAGUGUUUAUGGCCUUGGCCAGCUGAUC ...............((((((((((..(((((.((((((((...........((((.....))))............((.....))....)))))))))))))..))))))))))..... ( -34.10) >consensus ACACUAGCAACUUUCGCUGGCCAAGAUCGUAGUGCAUUAAUCAUCACAUCGCGUUCAAGCAGAACUUUCCAAUAUCUCGAUUACCGCCCAAUUAGUGUUUAUGGCCUUGGCCAGCUGAUC ...............((((((((((..(((((.((((((((...........((((.....))))............((.....))....)))))))))))))..))))))))))..... (-33.82 = -33.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:46 2006