Locus 7233

Sequence ID X_DroMel_CAF1
Location 18,076,215 – 18,076,330
Length 115
Max. P 0.713513
window11838

overview

Window 8

Location 18,076,215 – 18,076,330
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.05
Mean single sequence MFE -31.13
Consensus MFE -29.80
Energy contribution -28.70
Covariance contribution -1.10
Combinations/Pair 1.14
Mean z-score -1.33
Structure conservation index 0.96
SVM decision value 0.38
SVM RNA-class probability 0.713513
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18076215 115 - 22224390
CGCAACGCAGCUUCAUAGAUACUAAGAUACAUAGAUACUUUUGUGCGUUGUGUGUCCUGUUAGCAUCUUUAGCAGGACAGCUA-----CUUAGGCAGUUAGUUGAACCCGAAACGUUCGA
((((((((.(..((.(((...))).))..)(((((....)))))))))))))(((((((((((.....)))))))))))(((.-----....)))......((((((.......)))))) ( -32.50)
>DroSec_CAF1 932 112 - 1
CGCAAUGCAACUUCAUAGAUACUGAGA--------UACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAACAGGACAGCUACUUUACUUAGGCAGUUAGUUGAACCCGAAACGUUCGA
(((((((((...((.(((...))).))--------........))))))))).((((((((((.....))))))))))((((.(((.....))).))))..((((((.......)))))) ( -30.10)
>DroSim_CAF1 4269 107 - 1
CGCAAUGCAACUUCAUAGAUACUGAGA--------UACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAGCAGGACAGCUA-----CUUAGGCAGUUAGUUGAACCCGAAACGUUCGA
(((((((((...((.(((...))).))--------........)))))))))(((((((((((.....)))))))))))(((.-----....)))......((((((.......)))))) ( -30.80)
>consensus
CGCAAUGCAACUUCAUAGAUACUGAGA________UACUUUUGUGCGUUGCGUGUCCUGUUGGCAUCUUUAGCAGGACAGCUA_____CUUAGGCAGUUAGUUGAACCCGAAACGUUCGA
((((((((....((.(((...))).)).........((....))))))))))(((((((((((.....)))))))))))(((..........)))......((((((.......)))))) (-29.80 = -28.70 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:43 2006