Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,984,785 – 1,984,905 |
Length | 120 |
Max. P | 0.951126 |
Location | 1,984,785 – 1,984,905 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -48.03 |
Consensus MFE | -45.07 |
Energy contribution | -44.97 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.14 |
Mean z-score | -2.35 |
Structure conservation index | 0.94 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1984785 120 + 22224390 GGAACUGCAAGUACCCGGCUUAGCUGUCUGAAAGAUGGCGCCAGAGGCGGAGAGGGCUGCCUGCAGAGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGACGAAGAAACUGAGAAGGG .............(((..(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..))) ( -52.00) >DroEre_CAF1 7921 120 + 1 CGAACUGCAAGCACUCGGCUUAGCUGUCUGAAAGAUGCCGCCAGAGGCCGAGAGAGCUGCCUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUCGAAGAAACUGAGAAGGG .............(((..(((((...(((....((((.(((((...((((.(((((((((((..((....))..)))))))).)))))))))))).)))).....)))..)))))..))) ( -45.20) >DroYak_CAF1 18662 120 + 1 GGAACUGCAAGCACCGGGCUUAGCCGUCUGAAAAAUGGCGCCGGAGGCGGAGAGAGCUGCUUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUUGAAGAAACUGAGAAGGG .............((...(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..)). ( -46.90) >consensus GGAACUGCAAGCACCCGGCUUAGCUGUCUGAAAGAUGGCGCCAGAGGCGGAGAGAGCUGCCUGCAGGGCACUAGAGGUAGCUAUUCCGGCUGGCGUCGUUGUCGAAGAAACUGAGAAGGG .............(((..(((((...(((....(((((((((((...(((((..((((((((..((....))..)))))))).))))).))))))))))).....)))..)))))..))) (-45.07 = -44.97 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:05 2006