Locus 7228

Sequence ID X_DroMel_CAF1
Location 18,068,420 – 18,068,531
Length 111
Max. P 0.862232
window11821

overview

Window 1

Location 18,068,420 – 18,068,531
Length 111
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.16
Mean single sequence MFE -34.00
Consensus MFE -28.35
Energy contribution -28.13
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.76
Structure conservation index 0.83
SVM decision value 0.83
SVM RNA-class probability 0.862232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18068420 111 + 22224390
CCAGACUUUACGCUGGCUCUCUCUCUAUUUAUUUCUCGGACCUUAAUACCCUGGCC---------AUAAGGGGUAUGCUUAAUUUCUUUUUGGCAGGAUCAGGAAUUGAAUGGAGAGCUU
((((........))))....(((((((((((.(((..((.(((..(((((((....---------....)))))))(((.((......)).)))))).))..))).)))))))))))... ( -35.90)
>DroSec_CAF1 6175 111 + 1
CCAGACUUUACGCUGGCUCUCUCUCUAUUUAUUUCUCGGACCUUAAUACCCUGGCC---------AUAAGGGGUAUGCUUAAUUUCUUUUUGGCAGGAUCAAGAAUUGAAUGAAGAGCUU
((((........))))....((((.((((((.((((.((.(((..(((((((....---------....)))))))(((.((......)).)))))).)).)))).)))))).))))... ( -29.60)
>DroSim_CAF1 10732 120 + 1
CCAGACUUUGCGCUGGCUCUCUCUCUAUUUAUUUCUCGGACCUUAAUACCCUGGCCAUAAUGGCCAUAAGGGGUAUGCUUAAUUUCUUUUUGGCAGGAUCAAGAAUUGAAUGAAGAGCUU
((((........))))....((((.((((((.((((.((.(((..(((((((((((.....))))....)))))))(((.((......)).)))))).)).)))).)))))).))))... ( -36.50)
>consensus
CCAGACUUUACGCUGGCUCUCUCUCUAUUUAUUUCUCGGACCUUAAUACCCUGGCC_________AUAAGGGGUAUGCUUAAUUUCUUUUUGGCAGGAUCAAGAAUUGAAUGAAGAGCUU
((((........))))....((((.((((((.((((.((.(((..(((((((.................)))))))(((.((......)).)))))).)).)))).)))))).))))... (-28.35 = -28.13 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:29 2006