Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,067,199 – 18,067,318 |
Length | 119 |
Max. P | 0.858641 |
Location | 18,067,199 – 18,067,318 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.72 |
Mean single sequence MFE | -37.27 |
Consensus MFE | -31.74 |
Energy contribution | -32.30 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.56 |
Structure conservation index | 0.85 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18067199 119 + 22224390 UGCCAC-CUGAAGACUUCCUUGGGGAUUUUGGUAAGAUAUGAUUUUCUCAUCUCCCCGCCAUAUACAUAUGUGCACUUUCCCAAAGAGCGUCUGGUAGUCCCAUUGUUCUGCCAUUCGGU ......-(((((((((((.(((((((....((..((((..(.....)..))))..))((((((....)))).))...))))))).))).)))((((((..(....)..))))))))))). ( -34.70) >DroSec_CAF1 4988 117 + 1 UGCCAC-CUGAAGGCUUCCUUGGGGAUUUUGGCGGAAUAUGAUUUACGCAUCUCCCAGCCAU--ACAUAUGUGCACUUUCCCAAAGAGCGUCUGGUAGUCCCAUUGUUCUGCCACUCGGU .(((.(-((.((((...)))).)))....((((((((((......((((........(((((--....))).)).(((.....))).)))).(((.....))).))))))))))...))) ( -33.10) >DroSim_CAF1 8130 118 + 1 UGCCACUCUGAAGACUUCUUUGGGGAUUUUGGCGGGAUAUGAUUUACUCAUCUCCCAGCCAU--ACAUAUGUGCACUUUCCCAAAGAGCGUCUGGUAGUCCCAUUGUUCUGCCACUCGGU .(((.......(((((((((((((((...((((((((.((((.....)))).)))).))))(--((....)))....))))))))))).))))(((((..(....)..)))))....))) ( -44.00) >consensus UGCCAC_CUGAAGACUUCCUUGGGGAUUUUGGCGGGAUAUGAUUUACUCAUCUCCCAGCCAU__ACAUAUGUGCACUUUCCCAAAGAGCGUCUGGUAGUCCCAUUGUUCUGCCACUCGGU .(((.......(((((((.(((((((...((((((((.(((.......))).)))).))))...((....)).....))))))).))).))))(((((..(....)..)))))....))) (-31.74 = -32.30 + 0.56)
Location | 18,067,199 – 18,067,318 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.72 |
Mean single sequence MFE | -38.20 |
Consensus MFE | -31.09 |
Energy contribution | -30.43 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.19 |
Mean z-score | -2.51 |
Structure conservation index | 0.81 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18067199 119 - 22224390 ACCGAAUGGCAGAACAAUGGGACUACCAGACGCUCUUUGGGAAAGUGCACAUAUGUAUAUGGCGGGGAGAUGAGAAAAUCAUAUCUUACCAAAAUCCCCAAGGAAGUCUUCAG-GUGGCA .((.(.((......)).).)).(((((((((..((((((((.....((.((((....))))))((..(((((.(.....).)))))..))......)))))))).))))...)-)))).. ( -37.90) >DroSec_CAF1 4988 117 - 1 ACCGAGUGGCAGAACAAUGGGACUACCAGACGCUCUUUGGGAAAGUGCACAUAUGU--AUGGCUGGGAGAUGCGUAAAUCAUAUUCCGCCAAAAUCCCCAAGGAAGCCUUCAG-GUGGCA ((((((.(((.......(((.....))).....((((((((...(((((....)))--))(((.((((.(((.......))).)))))))......)))))))).)))))).)-)).... ( -35.50) >DroSim_CAF1 8130 118 - 1 ACCGAGUGGCAGAACAAUGGGACUACCAGACGCUCUUUGGGAAAGUGCACAUAUGU--AUGGCUGGGAGAUGAGUAAAUCAUAUCCCGCCAAAAUCCCCAAAGAAGUCUUCAGAGUGGCA .....((.((.......(((.....)))(((..((((((((...(((((....)))--))(((.((((.((((.....)))).)))))))......)))))))).)))......)).)). ( -41.20) >consensus ACCGAGUGGCAGAACAAUGGGACUACCAGACGCUCUUUGGGAAAGUGCACAUAUGU__AUGGCUGGGAGAUGAGUAAAUCAUAUCCCGCCAAAAUCCCCAAGGAAGUCUUCAG_GUGGCA ...(((.(((.......(((.....))).....((((((((.....(((....)))...((((.((((.((((.....)))).)))))))).....)))))))).))))))......... (-31.09 = -30.43 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:26 2006