| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,066,327 – 18,066,447 |
| Length | 120 |
| Max. P | 0.929624 |
| Location | 18,066,327 – 18,066,447 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.61 |
| Mean single sequence MFE | -41.07 |
| Consensus MFE | -41.07 |
| Energy contribution | -41.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18066327 120 - 22224390 AAUCCAGUUCAGUCCCGCUCUGAGGCUGAGCAUAUGCACUUCUGGUGUAUCUUCCCAGGACCUUAGGCCAAUCCCCGGCUAAUGGGUUCUAUCAUCGCAGUGCAUUAGCUAAUGCCGGGU .((((...((((.......))))(((..(((..(((((((..(((((.........(((((((..((((.......))))...)))))))..))))).)))))))..)))...))))))) ( -41.10) >DroSec_CAF1 4159 120 - 1 UAUCCAGUUCAGUCCCGCUCUGAGGCUGAGCAUAUGCACUUCUGGUGUAUCUUCCCAGGACCUUAGGCCAAUUCCCGGCUAAUGGGUUCUAUCAUCGCAGUGCAUUAGCUAAUGCCGGGU .((((...((((.......))))(((..(((..(((((((..(((((.........(((((((..((((.......))))...)))))))..))))).)))))))..)))...))))))) ( -41.00) >DroSim_CAF1 7300 120 - 1 CAUCCAGUUCAGUCCCGCUCUGAGGCUGAGCAUAUGCACUUCUGGUGUAUCUUCCCAGGACCUUAGGCCAAUCCCCGGCUAAUGGGUUCUAUCAUCGCAGUGCAUUAGCUAAUGCCGGGU .((((...((((.......))))(((..(((..(((((((..(((((.........(((((((..((((.......))))...)))))))..))))).)))))))..)))...))))))) ( -41.10) >consensus AAUCCAGUUCAGUCCCGCUCUGAGGCUGAGCAUAUGCACUUCUGGUGUAUCUUCCCAGGACCUUAGGCCAAUCCCCGGCUAAUGGGUUCUAUCAUCGCAGUGCAUUAGCUAAUGCCGGGU .((((...((((.......))))(((..(((..(((((((..(((((.........(((((((..((((.......))))...)))))))..))))).)))))))..)))...))))))) (-41.07 = -41.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:24 2006