Locus 7220

Sequence ID X_DroMel_CAF1
Location 18,063,694 – 18,063,802
Length 108
Max. P 0.936552
window11801

overview

Window 1

Location 18,063,694 – 18,063,802
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -33.78
Consensus MFE -29.92
Energy contribution -30.03
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.89
SVM decision value 1.25
SVM RNA-class probability 0.936552
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18063694 108 + 22224390
GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAGUCAUGCCGUGGCAAUCCAACCCACCCACUC------------UCACUGCCACUGCUACUGCUCGUACUCAUCCGACCCAUCCA
.............(.((((((.(..(((..((((((((......((((.........))))......------------..))))))))..).))..))))))).).............. ( -35.04)
>DroSec_CAF1 1582 120 + 1
GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCAUGGCAGUUCAACCCACCCACUCCCACAUUCACUCCCACUGCCACUGCCACUGCUCGUACUCAUCCGACCCAUCCA
.............(.((((((.((((((((((((((....)))).(((.(((...........))).)))..............))))).)))))...)))))).).............. ( -31.20)
>DroSim_CAF1 4676 120 + 1
GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCGUGGCAGUCCAACCCACCCACUCCCACAUUCACUCCCACUGCCACUGCCACUGCUCGUACUCAUCCGACCCAUCCA
.............(.((((((.((((((((((((((....))))((((.(((...........))).)))).............))))).)))))...)))))).).............. ( -35.10)
>consensus
GAUUAAAUCAAUAGUGUGCGAUGUGGUGUGGUGGCAUUCAUGCCGUGGCAGUCCAACCCACCCACUCCCACAUUCACUCCCACUGCCACUGCCACUGCUCGUACUCAUCCGACCCAUCCA
.............(.((((((.((((((((((((((....))))((((.........)))).......................))))).)))))...)))))).).............. (-29.92 = -30.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:12 2006