Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,063,254 – 18,063,374 |
Length | 120 |
Max. P | 0.584791 |
Location | 18,063,254 – 18,063,374 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -36.43 |
Consensus MFE | -29.23 |
Energy contribution | -29.90 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.80 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18063254 120 - 22224390 AAACCAAGAGCACACUGCCCAGAAACCUUAGCAGGCCAGGACUCAGCACUCAGGACCCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU ..............((((..((....))..))))....(((((..(((((..((.(((((.((((((..(((..(......)..)))...)))))).))).))))..))).))..))))) ( -35.60) >DroSec_CAF1 1170 106 - 1 AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC--------------UCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU ......(((((..(((....))).))))).....(((..(((--------------.(((((...(((....)))....))))).)))..)))..(((((((((....)))))))))... ( -37.10) >DroSim_CAF1 4257 106 - 1 AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC--------------CCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU ......(((((..(((....))).))))).....(((..(((--------------.(((((...(((....)))....))))).)))..)))..(((((((((....)))))))))... ( -36.60) >consensus AAACCCAGGGCACACUGCCCAGUAGCCCUACCAGGCCAGGAC______________CCAGCAAUGCCGAAUGUGGAACAUGCUGCGUCAAGGCAUUUUUGUGGCCAAAGUCGCAAAGUCU .......((((.....))))....(((......)))..((((...................((((((..(((..(......)..)))...))))))((((((((....)))))))))))) (-29.23 = -29.90 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:11 2006