Locus 7217

Sequence ID X_DroMel_CAF1
Location 18,060,455 – 18,060,615
Length 160
Max. P 0.882748
window11794 window11795 window11796 window11797

overview

Window 4

Location 18,060,455 – 18,060,575
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -41.03
Consensus MFE -38.93
Energy contribution -39.27
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.95
SVM decision value 0.49
SVM RNA-class probability 0.756317
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18060455 120 + 22224390
ACCAUAACCACCCACUUUGGCCGCCACCCAGAAAAGUUGGCAGCUGAAGGCGGCAGUAGCAGCCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUAC
.......((.....(((..((.((((.(.......).)))).))..)))..((((((((((((((....))...)))))))))...........((((.....))))...)))))..... ( -40.20)
>DroSec_CAF1 5622 120 + 1
ACCAUAACCACCCACUUUGGCCGCCACCCAGAAAAGUUGGCAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUAC
...............((((((.((((.(.......).))))....(((((((((((((....)))))))(((((((....))))))).................)))))))))))).... ( -41.20)
>DroSim_CAF1 13848 120 + 1
ACCAUAACCACCCACUUUGGCCGCCACCCAGAAAAGUUGGCAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCGUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUAC
...............((((((.((((.(.......).))))....(((((((((((((....)))))))(((((((....))))))).................)))))))))))).... ( -41.70)
>consensus
ACCAUAACCACCCACUUUGGCCGCCACCCAGAAAAGUUGGCAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUAC
...............((((((.((((.(.......).))))....((((((((((((......))))))(((((((....))))))).................)))))))))))).... (-38.93 = -39.27 +   0.33)

alignment

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secondary structure

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dotplot

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Window 5

Location 18,060,455 – 18,060,575
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -45.47
Consensus MFE -43.89
Energy contribution -44.00
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.97
SVM decision value 0.53
SVM RNA-class probability 0.771183
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18060455 120 - 22224390
GUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGGCUGCUACUGCCGCCUUCAGCUGCCAACUUUUCUGGGUGGCGGCCAAAGUGGGUGGUUAUGGU
....((((((....)))..))).((((..........((((((.(((....)))...))))))...(((((((...(((((((.(((....))))))))))......)))))))..)))) ( -44.60)
>DroSec_CAF1 5622 120 - 1
GUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUGCCAACUUUUCUGGGUGGCGGCCAAAGUGGGUGGUUAUGGU
(((((((.((((((((...((....(....)....(((((....))))))).((((((....)))))).)))))).(((((((.(((....))))))))))....)).))..)))))... ( -45.90)
>DroSim_CAF1 13848 120 - 1
GUAAUCCGGCGAAGGCUUAGGAAACCGAAAGACGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUGCCAACUUUUCUGGGUGGCGGCCAAAGUGGGUGGUUAUGGU
(((((((.((((((((...((....(....)....(((((....))))))).((((((....)))))).)))))).(((((((.(((....))))))))))....)).))..)))))... ( -45.90)
>consensus
GUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUGCCAACUUUUCUGGGUGGCGGCCAAAGUGGGUGGUUAUGGU
(((((((.((((((((...((....(....)....(((((....))))))).((((((....)))))).)))))).(((((((.(((....))))))))))....)).))..)))))... (-43.89 = -44.00 +   0.11)

alignment

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secondary structure

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dotplot

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Window 6

Location 18,060,495 – 18,060,615
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -43.90
Consensus MFE -42.53
Energy contribution -42.87
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.97
SVM decision value 0.49
SVM RNA-class probability 0.758119
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18060495 120 + 22224390
CAGCUGAAGGCGGCAGUAGCAGCCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUACGGAUUGCGUAUUGACAAUCACGGCAAUGGCAGCCAGAUAC
..((((((((((((((((((.(((.....)))..)))))))))...........((...))...))))))((((.....(((((((........))))).))....)))))))....... ( -41.60)
>DroSec_CAF1 5662 120 + 1
CAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUACGGAUUGCGUAUUGACAAUCACGGCAAUGGCAGCCAGAUAC
..((((((((((((((((....)))))))(((((((....))))))).................))))))((((.....(((((((........))))).))....)))))))....... ( -44.80)
>DroSim_CAF1 13888 120 + 1
CAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCGUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUACGGAUUGCGUAUUGACAAUCACGGCAAUGGCAGCCAGAUAC
..((((((((((((((((....)))))))(((((((....))))))).................))))))((((.....(((((((........))))).))....)))))))....... ( -45.30)
>consensus
CAGCUGAAGGCGGCAGGAGCAGUCCUGCUGGUAAGCUGCUGCUUAUCUUCUUUCGGUUUCCUAAGCCUUCGCCGGAUUACGGAUUGCGUAUUGACAAUCACGGCAAUGGCAGCCAGAUAC
..(((((((((((((((......))))))(((((((....))))))).................))))))((((.....(((((((........))))).))....)))))))....... (-42.53 = -42.87 +   0.33)

alignment

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secondary structure

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dotplot

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Window 7

Location 18,060,495 – 18,060,615
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -42.60
Consensus MFE -41.29
Energy contribution -41.40
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.97
SVM decision value 0.92
SVM RNA-class probability 0.882748
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18060495 120 - 22224390
GUAUCUGGCUGCCAUUGCCGUGAUUGUCAAUACGCAAUCCGUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGGCUGCUACUGCCGCCUUCAGCUG
(((...((((((..((((((.(((......((((.....)))))))))))))..((((((....)(....)....))))).)))))))))(((((((((.((....)).)))))..)))) ( -41.20)
>DroSec_CAF1 5662 120 - 1
GUAUCUGGCUGCCAUUGCCGUGAUUGUCAAUACGCAAUCCGUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUG
......((((((((((((.(.((((((......))))))))))))..)))((((((...((....(....)....(((((....))))))).((((((....)))))).)))))))))). ( -43.30)
>DroSim_CAF1 13888 120 - 1
GUAUCUGGCUGCCAUUGCCGUGAUUGUCAAUACGCAAUCCGUAAUCCGGCGAAGGCUUAGGAAACCGAAAGACGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUG
......((((((((((((.(.((((((......))))))))))))..)))((((((...((....(....)....(((((....))))))).((((((....)))))).)))))))))). ( -43.30)
>consensus
GUAUCUGGCUGCCAUUGCCGUGAUUGUCAAUACGCAAUCCGUAAUCCGGCGAAGGCUUAGGAAACCGAAAGAAGAUAAGCAGCAGCUUACCAGCAGGACUGCUCCUGCCGCCUUCAGCUG
......((((((((((((.(.((((((......))))))))))))..)))((((((...((....(....)....(((((....))))))).((((((....)))))).)))))))))). (-41.29 = -41.40 +   0.11)

alignment

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secondary structure

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dotplot

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Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:08 2006