Locus 7215

Sequence ID X_DroMel_CAF1
Location 18,058,903 – 18,059,023
Length 120
Max. P 0.639791
window11790

overview

Window 0

Location 18,058,903 – 18,059,023
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -36.50
Consensus MFE -35.13
Energy contribution -35.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.96
SVM decision value 0.22
SVM RNA-class probability 0.639791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18058903 120 + 22224390
CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGAUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU
....((...(((....(.(((...((((.((((((((.....))))))))..))))....(((((..((..........))..)))))))).)....)))..))................ ( -34.90)
>DroSec_CAF1 3463 120 + 1
CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU
....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ ( -37.30)
>DroSim_CAF1 11704 120 + 1
CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU
....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ ( -37.30)
>consensus
CUAAGAACGGCACUAGCACGCACACAUGAACGCCCUCGAAGAGGGGGCGUGGCAUGGGGCUAACGGUGAAGGAGGAUUGUCGUCGUUGGCGGGAAAAUGCACUCAAAAUGAAAAUGAAAU
....((...((....))..(((..((((.((((((((.....))))))))..))))..(((((((..((..........))..))))))).......)))..))................ (-35.13 = -35.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:02 2006