Locus 7213

Sequence ID X_DroMel_CAF1
Location 18,057,574 – 18,057,694
Length 120
Max. P 0.547826
window11785

overview

Window 5

Location 18,057,574 – 18,057,694
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -26.63
Consensus MFE -23.69
Energy contribution -24.13
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.83
Structure conservation index 0.89
SVM decision value 0.03
SVM RNA-class probability 0.547826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18057574 120 - 22224390
UUCCGUUGCCUUGGGGUUUUAAUUAAAAGCUUAAUUGGAGGGCGGAAAAAAUUAAAUAAAAUGAUUGCGUAAUUAAAAGCAAACAAAGCCAAAAAAAUGCCAGUCGCCAAAAGGUGGUCA
(((((((.((...(((((((.....)))))))....))..)))))))..............((.((((..........)))).)).................((((((....))))).). ( -23.70)
>DroSec_CAF1 2201 120 - 1
UUCGGUUGCCUUGGGGUUUUAAUUAAAAGCUUAAUUGGAGGGCGAAAAAAAUUAAAUAAAAUGAUUGCGUAAUUAAAAGCAAACAAAGCCGAAAAAAUGCCCGUCGCCAAAAGGUGGUCA
...((..(((((..((((((((((((....)))))))))(((((....................((((..........)))).(......)......)))))...)))..)))))..)). ( -27.60)
>DroSim_CAF1 2218 120 - 1
UUCGGUUGCCUUGGGGUUUUAAUUAAAAGCUUAAUUGGAGGGCGGAAAAAAUUAAAUAAAAUGAUUGCGUAAUUAAAAGCAAACAAAGCCGAAAAAAUGCCCGUCGCCAAAAGGUGGUCA
...((..(((((..((((((((((((....))))))))).(((((................((.((((..........)))).))..((.........))))))))))..)))))..)). ( -28.60)
>consensus
UUCGGUUGCCUUGGGGUUUUAAUUAAAAGCUUAAUUGGAGGGCGGAAAAAAUUAAAUAAAAUGAUUGCGUAAUUAAAAGCAAACAAAGCCGAAAAAAUGCCCGUCGCCAAAAGGUGGUCA
...((..(((((..((((((((((((....)))))))))(((((((.....))........((.((((..........)))).))............)))))...)))..)))))..)). (-23.69 = -24.13 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:57 2006