Locus 7212

Sequence ID X_DroMel_CAF1
Location 18,056,839 – 18,057,037
Length 198
Max. P 0.982586
window11782 window11783 window11784

overview

Window 2

Location 18,056,839 – 18,056,959
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -26.67
Consensus MFE -24.80
Energy contribution -24.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.93
SVM decision value 0.23
SVM RNA-class probability 0.644204
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18056839 120 - 22224390
ACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUUUGCUCAUUCUUGUUGCUGGAAAAACUUAAUUUGCUGUCUG
...(((((.(((...........))))))))...(((((((.((((((........)))))).)))))))((((.((((..((........)).)))).))))................. ( -24.60)
>DroSec_CAF1 1504 120 - 1
ACUGUCCUUGGAUCCUCUCCUUCUCCAGGAUACUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUUUGCUCAUUCUUGUUGCUGGAAAAACUUAAUUUGCUGUCUG
..((((((.(((...........)))))))))..(((((((.((((((........)))))).)))))))((((.((((..((........)).)))).))))................. ( -25.90)
>DroSim_CAF1 1522 120 - 1
ACUGUCCUGGGAUUCUUGCCAUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUUUGCUCAUUCUUGUUGCUGGAAAAACUUAAUUUGCUGUCUG
...((((((((((.......))).)))))))...(((((((.((((((........)))))).)))))))((((.((((..((........)).)))).))))................. ( -29.50)
>consensus
ACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUUUGCUCAUUCUUGUUGCUGGAAAAACUUAAUUUGCUGUCUG
...(((((.(((...........))))))))...(((((((.((((((........)))))).)))))))((((.((((..((........)).)))).))))................. (-24.80 = -24.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 18,056,879 – 18,056,997
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.02
Mean single sequence MFE -23.73
Consensus MFE -21.60
Energy contribution -21.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.66
Structure conservation index 0.91
SVM decision value 1.92
SVM RNA-class probability 0.982586
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18056879 118 - 22224390
ACACAUA--UAUUUUAAACACACUUUACCCAUUUAUAUCCACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUU
.......--...............................(((((....(((.(((((.......))))).)))(((((((.((((((........)))))).)))))))....))))). ( -22.40)
>DroSec_CAF1 1544 118 - 1
ACACAUA--UAUUUUAAAUACAAUUUUCCCAUUUAUACCCACUGUCCUUGGAUCCUCUCCUUCUCCAGGAUACUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUU
.......--...............................(((((.((((((...........)))))).....(((((((.((((((........)))))).)))))))....))))). ( -22.30)
>DroSim_CAF1 1562 120 - 1
ACACAUAUAUAUUUUAAAUACAAUUUCCCCAUUUAUACCCACUGUCCUGGGAUUCUUGCCAUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUU
........................................(((((((((((((.......))).))))))....(((((((.((((((........)))))).))))))).....)))). ( -26.50)
>consensus
ACACAUA__UAUUUUAAAUACAAUUUACCCAUUUAUACCCACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAUCUACUUAAACUUUGUCUUGAGUUGAUUUCCUUUUACAGUU
........................................((((((((.(((...........)))))))....(((((((.((((((........)))))).))))))).....)))). (-21.60 = -21.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 18,056,919 – 18,057,037
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.58
Mean single sequence MFE -18.99
Consensus MFE -16.05
Energy contribution -16.17
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.52
Structure conservation index 0.85
SVM decision value 0.92
SVM RNA-class probability 0.882292
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18056919 118 - 22224390
UAUGUACCCUACUACUCCAUCUUCUUGUUAUACACGAAACACACAUA--UAUUUUAAACACACUUUACCCAUUUAUAUCCACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAU
.....................(((.((.....)).))).........--............................((((..(((((.(((...........))))))))..))))... ( -13.80)
>DroSec_CAF1 1584 115 - 1
UAUGUGCCAUA---CUCUAUCUUCUUGUUAUACACGAAACACACAUA--UAUUUUAAAUACAAUUUUCCCAUUUAUACCCACUGUCCUUGGAUCCUCUCCUUCUCCAGGAUACUGGGAAU
((((((.....---...........((((........))))))))))--............................((((.((((((.(((...........))))))))).))))... ( -19.59)
>DroSim_CAF1 1602 117 - 1
UAUGUGCCCUA---CUCUAUCUUCUUGUUAUACACGAAACACACAUAUAUAUUUUAAAUACAAUUUCCCCAUUUAUACCCACUGUCCUGGGAUUCUUGCCAUCUCCAGGAUUCUGGGAAU
((((((.....---...........((((........))))))))))..............................((((..((((((((((.......))).)))))))..))))... ( -23.59)
>consensus
UAUGUGCCCUA___CUCUAUCUUCUUGUUAUACACGAAACACACAUA__UAUUUUAAAUACAAUUUACCCAUUUAUACCCACUGUCCUUGGAUUCUUGCCUUCUCCAGGAUUCUGGGAAU
((((((...................((((........))))))))))..............................((((..(((((.(((...........))))))))..))))... (-16.05 = -16.17 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:56 2006