Locus 7210

Sequence ID X_DroMel_CAF1
Location 18,055,621 – 18,055,741
Length 120
Max. P 0.980519
window11778

overview

Window 8

Location 18,055,621 – 18,055,741
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -43.57
Consensus MFE -41.49
Energy contribution -41.27
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -3.28
Structure conservation index 0.95
SVM decision value 1.86
SVM RNA-class probability 0.980519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18055621 120 + 22224390
UGCGACACCUGCACCGAAUCCGGGAUUCUGUGGGUGUCUCACUUUCGGUUGAAGUCGGAUUCAGGCAUAAUUUAUGCCUGCGAUUAUCAUAAUAAUUCGCCAGACCAGUCCGACACACAC
((.((((((..((..(((((...)))))))..)))))).))............((((((((.(((((((...)))))))((((((((....)))).))))......))))))))...... ( -42.30)
>DroSec_CAF1 321 120 + 1
UGCGACACCUGCACCGAGUCCGGGAUUCUGUGGGUGUCUCACUUUCGGUUGAAGUCGGAUUCAGGCAUAAUUUAUGCCGGCGAUUAUCAUAAUAAUUCGCCAGACCAGUCCGACACACAC
((.((((((..((..(((((...)))))))..)))))).))............((((((((..((((((...))))))(((((((((....)))).))))).....))))))))...... ( -46.10)
>DroSim_CAF1 320 120 + 1
UGCGACACCUGCACCGAGUCCGGGAUUCUGUGGGUGUCUCACUUUCGGUUGAAGUCGGAUUCAGGCAUAAUUUAUGCCUGCGAUUAUCAUAAUAAUUCGCCAGACCAGUCCGACACACAC
((.((((((..((..(((((...)))))))..)))))).))............((((((((.(((((((...)))))))((((((((....)))).))))......))))))))...... ( -42.30)
>consensus
UGCGACACCUGCACCGAGUCCGGGAUUCUGUGGGUGUCUCACUUUCGGUUGAAGUCGGAUUCAGGCAUAAUUUAUGCCUGCGAUUAUCAUAAUAAUUCGCCAGACCAGUCCGACACACAC
((.((((((..((..(((((...)))))))..)))))).))............((((((((..((((((...)))))).((((((((....)))).))))......))))))))...... (-41.49 = -41.27 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:51 2006