Locus 7207

Sequence ID X_DroMel_CAF1
Location 18,045,135 – 18,045,249
Length 114
Max. P 0.711277
window11773

overview

Window 3

Location 18,045,135 – 18,045,249
Length 114
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 81.71
Mean single sequence MFE -22.01
Consensus MFE -14.51
Energy contribution -15.75
Covariance contribution 1.24
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.66
SVM decision value 0.38
SVM RNA-class probability 0.711277
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18045135 114 - 22224390
AAUGUGUGAGUAAAUCAAUAUUUU--CCGAUCUACAUCCUAGUCGUUACAAAAGCUAACAAUUAACAUACUUGCUUGGAUAUUGACGAAUAUCCUUGCAUGUGGCAGCUACUCAAA
......((((((............--.(((.(((.....))))))........(((..((...........(((..(((((((....)))))))..)))..))..))))))))).. ( -23.12)
>DroSec_CAF1 33009 114 - 1
AAAAUGUGAGUAAGCCAAUAUUUU--CCGAUCUACAUCCUAGUCGCUACAAAAGCAAACAAUAUACAUACUUGCUAGGAUAUUGACGAAUAUCCCUGCAUGAGGCAGCUACUCAAA
......((((((.(((.(((((..--..((.(((.....)))))(((.....)))....))))).....(.(((..(((((((....)))))))..))).).)))...)))))).. ( -25.50)
>DroSim_CAF1 33676 114 - 1
AAAAUGUGAGUAAGCCAAUAUUUU--CCGAUCUACAUCCUAGUCGCUACAAAAGCAAACAAUAUACAUACUUGCUAGGAUAUUGACGAAUAUCCCUGCAUGAGGCAGCUACUCAAA
......((((((.(((.(((((..--..((.(((.....)))))(((.....)))....))))).....(.(((..(((((((....)))))))..))).).)))...)))))).. ( -25.50)
>DroEre_CAF1 34198 108 - 1
GAAAUGUGAGUAAACAGC-UUUUC--CAGAUCUAACCCCAAGUCUUUACAAAAUCAAACAAUA----UACUUGCCACGAUAUCGACGAAUAUCCC-AUAUGUGGCAGCUACUCAAA
......(((((....(((-.....--.((((..........))))..................----....(((((((((((......)))))..-....)))))))))))))).. ( -16.40)
>DroYak_CAF1 32275 111 - 1
GUAAUGUGAGUAAACACA-UUUUUCACAGAUCUACUCACUAGUCGUUACAAAACAAAACAAUA----UACUAGCCAGGAUAUCGACGAAUAUCCCUGCAUGUGGCAACUACUUAAA
.....(((((((......-.............)))))))((((.((((((...........((----...))((..((((((......))))))..)).)))))).))))...... ( -19.51)
>consensus
AAAAUGUGAGUAAACCAAUAUUUU__CCGAUCUACAUCCUAGUCGUUACAAAAGCAAACAAUA_ACAUACUUGCUAGGAUAUUGACGAAUAUCCCUGCAUGUGGCAGCUACUCAAA
......((((((................((.(((.....)))))((((((.....................(((..(((((((....)))))))..)))))))))...)))))).. (-14.51 = -15.75 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:46 2006