| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,041,969 – 18,042,063 |
| Length | 94 |
| Max. P | 0.662823 |
| Location | 18,041,969 – 18,042,063 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -15.16 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18041969 94 - 22224390 CUCUGCUAUUUUAUUUGGACUUCAAGAUGUUUCAGAGUGCACUUCAAGUGCGUUACAAUUUGCGUCUAUUUUUGGCCGCUUGGGAAUAUCUCG-G ......................(.(((((((((.....((((.....))))..........(((.(((....))).)))...))))))))).)-. ( -19.80) >DroPse_CAF1 3299 93 - 1 CUGU-UUUUUUUUUUUUAAUUUCAAGAUGUUUCGGAGUGCACUUAAAGUGCGUUACAACUUGUGUCUAUAUUUGGCUGCUUGGGAAUAUCUCG-C ....-...................(((((((((.((((((((.....))))............(((.......))).)))).)))))))))..-. ( -21.10) >DroGri_CAF1 67858 94 - 1 UGUUGUUAUUUUAUUUCAGCGUCAAGAUGUUUCAAAGUGCACUUCAAGUGCGUUACAAUUUGUGUCUAUUUUUAGCAGCUUGGGAAUACGACA-G .((((...........))))(((....((((((.((((((((.....))))...........((.(((....))))))))).)))))).))).-. ( -17.40) >DroMoj_CAF1 89262 94 - 1 UGUUGCUGUUUUAUUUGAGCGUCAAGAUGUUUCAAAGUGCACUUCAAGUGCGCUACAAUUUUUGUCUAUUUUUAGGUACUUGGGAAUACGACA-G .((((.........((((((((....))).)))))(((((((.....))))))).))))...(((((((((((((....))))))))).))))-. ( -22.60) >DroAna_CAF1 66724 91 - 1 AAAU-ACA---CAUUUCGAGUUCAAGAUGUUUCAAAGUGCACUUCAAGUGCGUUACAAUUUGUGUCUAUUUUUGGCAGCUUGGGAAUAUCUCUCC ....-...---......(((....(((((((((.((((((((.....))))...........((((.......)))))))).)))))))))))). ( -21.70) >DroPer_CAF1 3737 93 - 1 CUGU-UUUUUUUUUUUUAAUUUCAAGAUGUUUCGGAGUGCACUUAAAGUGCGUUACAAUUUUUGUCUAUAUUUGGCUGCUUGGGAAUAUCUCG-C ....-...................(((((((((.((((((((.....))))............(((.......))).)))).)))))))))..-. ( -21.10) >consensus CUGU_UUAUUUUAUUUCAACUUCAAGAUGUUUCAAAGUGCACUUCAAGUGCGUUACAAUUUGUGUCUAUUUUUGGCUGCUUGGGAAUAUCUCG_C ........................(((((((((.((((((((.....))))..............(((....)))..)))).))))))))).... (-15.16 = -15.55 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:45 2006