Locus 7205

Sequence ID X_DroMel_CAF1
Location 18,034,681 – 18,034,774
Length 93
Max. P 0.927711
window11771

overview

Window 1

Location 18,034,681 – 18,034,774
Length 93
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 77.66
Mean single sequence MFE -24.82
Consensus MFE -16.64
Energy contribution -15.82
Covariance contribution -0.81
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.67
SVM decision value 1.19
SVM RNA-class probability 0.927711
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18034681 93 - 22224390
GCGCCAUCCUGCGGAUUCGCACAGAUGUGCAGAUAUGUAGAUAAGAUAUUUAUAUAUAUA-------------UAUAGUCACACGUCAGCAUAUCAGCGUACUCAC
((((.....((((....))))..(((((((.((..(((.(((...((((........)))-------------)...))))))..)).))))))).))))...... ( -25.80)
>DroSim_CAF1 23737 94 - 1
GCGCCAUCCUGCGGAUUCGCACAGAUGUGCAGAUAUGUAGAUAAGAUAUAUAUAUAUAUA------------GUAUAGUCACACGUCAGCAUAUCAGCGUACUCAC
((((.....((((....))))..(((((((.((..(((.(((.(..(((((....)))))------------...).))))))..)).))))))).))))...... ( -25.90)
>DroEre_CAF1 24429 81 - 1
GCGCCAUCCUGUGGAUUCGC--AGAUGUGCAGAUAUGUAGAUAAGAUAUAUAUAGUC-----------------------ACACGUCGGCAUAUCGCCGUACUUAC
((((((((.((((....)))--))))).)).(((((((.(((..(((.......)))-----------------------....))).)))))))))......... ( -21.80)
>DroYak_CAF1 22589 99 - 1
GCGCCAUCCUGCGGAUUCGCACAAAUGUGCAGAUAUGUAGAUAAGAUAUAUAGAUACAGAUUCAGAGAUUCA-------GAUACGUCAGCGUAUCAGGGCACUUAC
..(((...(((((.((..((((....))))..)).)))))................................-------((((((....))))))..)))...... ( -25.80)
>consensus
GCGCCAUCCUGCGGAUUCGCACAGAUGUGCAGAUAUGUAGAUAAGAUAUAUAUAUACAUA___________________CACACGUCAGCAUAUCAGCGUACUCAC
(((..((((...)))).)))...((.((((.(((((((.(((..........................................))).)))))))...)))))).. (-16.64 = -15.82 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:44 2006