Locus 7204

Sequence ID X_DroMel_CAF1
Location 18,034,256 – 18,034,353
Length 97
Max. P 0.534823
window11770

overview

Window 0

Location 18,034,256 – 18,034,353
Length 97
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 77.16
Mean single sequence MFE -11.84
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.21
Structure conservation index -0.00
SVM decision value 0.00
SVM RNA-class probability 0.534823
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18034256 97 + 22224390
CACAUAAAUUU--CCCCUACACCC-AGCUAACACUUACACUUA-----CAUUCCGAUAUAUGUAUGUUUACGAACGC------AUACCU-----UUGCGCCGGCGAAGAACCCAAA
........(((--(.((.......-........(.((.((.((-----(((........))))).)).)).)..(((------(.....-----.))))..)).))))........ ( -11.80)
>DroSec_CAF1 22191 93 + 1
CACAUAAAUUU--CCCCUACACCC-AGCUAACA----CACUUA-----CAUUCCGAUAUAACUAUGUAUACUAACGC------AUACCU-----UUGCGCUGGCGAAGAACCCAAA
...........--........(((-(((.....----....((-----(((............))))).......((------(.....-----.)))))))).)........... ( -13.20)
>DroSim_CAF1 23316 93 + 1
CACAUAAAUUU--CCCCUACACCC-AGCUAACA----CACUUA-----CAUUCCGAUAUAAGUAUGUAUACUAACGC------AUACCU-----UUGCGCUGGCGAAGAACCCAAA
...........--........(((-(((..(((----.(((((-----.((....)).))))).)))........((------(.....-----.)))))))).)........... ( -16.00)
>DroEre_CAF1 23967 103 + 1
CCCAUAAAUUU--CCCCCACAUCC-AGCUCACA------CUUACUGCACAUUCCCAU----AGAAGUAUACGAACGCUAUAAGGUAUCUUCAGCUAUCGCCGGCAAAGAACCAAAU
...........--...........-(((.....------..((((............----...)))).......)))....(((.((((..(((......))).))))))).... ( -10.60)
>DroYak_CAF1 22131 94 + 1
CCCAUAAAUUUACCCCCCACAUCCAAGCUAACA------CUUA-----CAUUCUGAUAAAUAUAAGUAAACGAACGC------AUACCU-----UAUCGCCGGCGAAGAAGCAAAA
..........................(((...(------((((-----.(((......))).)))))..........------......-----..(((....)))...))).... (  -7.60)
>consensus
CACAUAAAUUU__CCCCUACACCC_AGCUAACA____CACUUA_____CAUUCCGAUAUAAAUAUGUAUACGAACGC______AUACCU_____UUGCGCCGGCGAAGAACCCAAA
.................................................................................................................... (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:43 2006