Locus 7203

Sequence ID X_DroMel_CAF1
Location 18,032,405 – 18,032,509
Length 104
Max. P 0.765050
window11769

overview

Window 9

Location 18,032,405 – 18,032,509
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 83.81
Mean single sequence MFE -21.26
Consensus MFE -14.71
Energy contribution -14.78
Covariance contribution 0.06
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.69
SVM decision value 0.51
SVM RNA-class probability 0.765050
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18032405 104 + 22224390
GGCGUAUCUAUUAGAUAACCAAAUAGUUAAAUGUAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACACCACUCUAUAGACACCUCCAUGCAAAGGUAAC
....((((.....))))(((...(((((((((((....)))))).)))))....((((.(((((((.....................))))))))))))))... ( -19.90)
>DroSec_CAF1 20396 92 + 1
GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACAUAACU------------CCAUGCAAAGGUAAC
....((((.....))))(((...((((((((((......))))).)))))....((((.(((((((((.....))))------------))))))))))))... ( -23.40)
>DroSim_CAF1 20705 104 + 1
GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAUCUAAAUAUUUGAUAUGGAGUUUACAUAACUCUAUAGACACCUCCAUGCAAAGGUAAC
(((.((((.....))))..((((((((((((((......)))))))).....)))))).(((((((((.....))))))))))))((((........))))... ( -20.30)
>DroYak_CAF1 20160 104 + 1
GUUGCAUCUAUUAGAUAGCCAAAUAGUUAGAUGUAUGCAUGUUUAAACUAAAUAUUUAAUAUGGUGUUCAGCUAGCUGCGAACACACCUCCAUGUAAAGGUAAC
..(((((((((((..........))).))))))))..((((((..............))))))((((((.((.....))))))))((((........))))... ( -21.44)
>consensus
GUUGUAUCUAUUAGAUAGCCAAAUAGUUAAAUGCAUGUACGUUUAAACUAAAUAUUUGAUAUGGAGUUUACAUAACUCUAUAGACACCUCCAUGCAAAGGUAAC
....((((.....))))(((...((((((((((......))))))).)))....((((.(((((((.....................))))))))))))))... (-14.71 = -14.78 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:42 2006