Locus 7201

Sequence ID X_DroMel_CAF1
Location 18,030,937 – 18,031,041
Length 104
Max. P 0.848584
window11765

overview

Window 5

Location 18,030,937 – 18,031,041
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.03
Mean single sequence MFE -39.42
Consensus MFE -30.70
Energy contribution -30.74
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.78
SVM RNA-class probability 0.848584
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18030937 104 + 22224390
GGUCACUUGUUGCCCCGCCUCGGAA------UCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAACUGGGG----ACG------ACGCACAUCCUUGUGGAUGUGGAGCACCG
(((..(((((((((((..(((((..------...))))).........((((((((..........))))))))))))----.))------)).(((((((....)))))))))).))). ( -40.30)
>DroSec_CAF1 18940 103 + 1
GGUCACUUGUUGCCCCGCC-CGGAA------UCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAACUGGGG----ACG------ACGCACAUCCUUCUGGAUGUGGAGCACUG
(.((....((((((((.((-(((..------...))))).........((((((((..........))))))))))))----.))------)).(((((((....))))))))).).... ( -41.80)
>DroSim_CAF1 19268 104 + 1
GGUCACUUGUUGCCCCGCCUCGGAA------UCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAACUGGGG----ACG------ACGCACAUCCUUGUGGAUGUGGAGCACUG
(.((....((((((((..(((((..------...))))).........((((((((..........))))))))))))----.))------)).(((((((....))))))))).).... ( -38.90)
>DroEre_CAF1 20917 104 + 1
GGUCACUUGUUGCCCCGCCUCGGAA------UCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAGCUGGGG----ACG------ACGCACAUCCUUGUGGAUGUGGAGCACUG
(.((....((((((((..(((((..------...))))).........((((((((..........))))))))))))----.))------)).(((((((....))))))))).).... ( -38.90)
>DroYak_CAF1 18675 120 + 1
GGUCACUUGUUGCCCCGCCUCGGAAUCGAAAUCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAACUGGGGGAGGACGACAGCAACUCACAUCCUUGUGGAUGUUGAGCACUG
.(((.(((....((((..(((((...((....))))))).........((((((((..........))))))))))))))))))..(((...(((((((((....))))).))))..))) ( -37.20)
>consensus
GGUCACUUGUUGCCCCGCCUCGGAA______UCGCUGGGAUCUAAUCAAGUUUGGUAAAUAUUUGAGCCGAACUGGGG____ACG______ACGCACAUCCUUGUGGAUGUGGAGCACUG
(.((....((..((((.((.(((...........))))).........((((((((..........))))))))))))....))..........(((((((....))))))))).).... (-30.70 = -30.74 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:38 2006