Locus 7199

Sequence ID X_DroMel_CAF1
Location 18,020,861 – 18,020,964
Length 103
Max. P 0.591882
window11761

overview

Window 1

Location 18,020,861 – 18,020,964
Length 103
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 90.29
Mean single sequence MFE -36.05
Consensus MFE -27.63
Energy contribution -28.25
Covariance contribution 0.63
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.77
SVM decision value 0.12
SVM RNA-class probability 0.591882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18020861 103 - 22224390
GUCGGGAAAGUGUACAGACUGGCAGUUACAAUGUGUUUCUGUGUGGGUGUG----UGUGUGGCUCUCAGUUACCCUUUUAUGGGCUGCCUGGGCAGUCUAUUAGGCU
...((((..(..((((.(((.((((..((.....))..))))...))).))----))..)...))))......(((...(((((((((....))))))))).))).. ( -34.70)
>DroSec_CAF1 8132 101 - 1
GUCGGGAAAGUGGGGAGACUGGCAGUUACAAUGUGUUUCUGUGUGGGUGG------GUGUGGCUCUCAGUUACCCUUUUAUGGGCUGCCUGGGCAGUCUAUUAGGCC
(((........((((.((((((.(((((((......(((.....)))...------.))))))).)))))).))))...(((((((((....)))))))))..))). ( -35.60)
>DroSim_CAF1 9435 101 - 1
GUCGGGAAAGUGGGGAGCCUGGCAGUUACAAUGUGUUUCUGUGUGGGUGU------GUGUGGCUCUCAGUUACCCUUUUAUGGGCUGCCUGGGCAGUCUAUUAGGCC
((((((.((.((((.((((..(((.(((((..(.....)..))))).)))------....)))))))).)).)))....(((((((((....)))))))))..))). ( -38.30)
>DroEre_CAF1 11813 106 - 1
GGCGAGGAAGUGG-GAGACUGGCAGUUACAUUGUGCUUUUGUGUGGGUGUGUGGGUGUGUGGCUCUCUGUUACCCUUUUAUGGGCUGCCUGGGCAGUCUAUUAGGCC
(((.((..(((.(-.(.(((.(((..(((.(..(((....)))..))))))).))).).).)))..))......((...(((((((((....))))))))).))))) ( -35.60)
>consensus
GUCGGGAAAGUGGGGAGACUGGCAGUUACAAUGUGUUUCUGUGUGGGUGU______GUGUGGCUCUCAGUUACCCUUUUAUGGGCUGCCUGGGCAGUCUAUUAGGCC
(((..(((((.((...((((((.(((((((.......(((....)))..........))))))).)))))).)))))))(((((((((....)))))))))..))). (-27.63 = -28.25 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:35 2006