Locus 7198

Sequence ID	X_DroMel_CAF1
Location	18,018,159 – 18,018,250
Length	91
Max. P	0.519999

overview

Window 0

Location	18,018,159 – 18,018,250
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	91.61
Mean single sequence MFE	-26.86
Consensus MFE	-18.84
Energy contribution	-19.28
Covariance contribution	0.44
Combinations/Pair	1.04
Mean z-score	-2.17
Structure conservation index	0.70
SVM decision value	-0.03
SVM RNA-class probability	0.519999
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18018159 91 + 22224390
--ACAACAAUAACGCCAGUGGGGCAAACUCCUCAGCGGCCCACGUUGCGUAUGAUAAAUAUUGUUGUUUCCCAUCCGCACUGAUAAGCGAAAU
--(((((((((((((..(((((.(............).)))))...))))........)))))))))........(((........))).... ( -24.40)
>DroSec_CAF1 5535 91 + 1
--ACUACAAUAACGUCAGUGGGGCAAACUCCACAGCGGCCCACGCUGCGUAUGAUAAAUAUUGUUGUUUCCCAUGCGCACUGAUAAGCGAAAU
--...........((((((((((....))))))((((.....))))(((((((..(((((....)))))..)))))))..))))......... ( -28.00)
>DroSim_CAF1 6811 91 + 1
--ACUACAAUAACGUCAGUGGGGCAAACUCCACAGCGGCCCACGCUGCGUAUGAUAAAUAUUGUUGUUUCCCAUGCGCACUGAUAAGCGAAAU
--...........((((((((((....))))))((((.....))))(((((((..(((((....)))))..)))))))..))))......... ( -28.00)
>DroEre_CAF1 9182 86 + 1
------CAAAAACGUCAGUGGGG-AAACUCCGCGGCGGCCCACGCGGCGUAUGAUAAAUAUUUUUGUUUCCCAUCCGCACUGAUAAGCGAAAU
------.......(((((((.((-(.((.(((((........))))).))..((((((....)))))).....))).)))))))......... ( -28.00)
>DroYak_CAF1 5901 93 + 1
CAACUACAAUAACGUCAGUGGGGCAAAGUGCUCAGCGGCCCACGCUGCGUAUGAUAAAUAUUGUUGUUUCCCAUCCGCACUGAUAAGCGAAAU
.(((.(((((((((.(((((((((...((.....)).)))).))))))))........)))))).))).......(((........))).... ( -25.90)
>consensus
__ACUACAAUAACGUCAGUGGGGCAAACUCCACAGCGGCCCACGCUGCGUAUGAUAAAUAUUGUUGUUUCCCAUCCGCACUGAUAAGCGAAAU
.............((((((.((((...((....))..)))).....(((.(((..(((((....)))))..))).)))))))))......... (-18.84 = -19.28 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:34 2006