| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,017,985 – 18,018,080 |
| Length | 95 |
| Max. P | 0.545898 |
| Location | 18,017,985 – 18,018,080 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.43 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -13.95 |
| Energy contribution | -13.78 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18017985 95 + 22224390 AAAACAGCGAAACCGUAAAA-----CCCUAACCAUGUGCAGUGUGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGUUA ..(((.(((....)))....-----.(((..((((((.....((((((........((((...))))))))))......)).)))).....)))..))). ( -18.20) >DroVir_CAF1 30095 77 + 1 ------------------AG-----GGAGUGCAGUGUGCAAUGUGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGCUA ------------------..-----..((((((((((((.....))))))).....((((...))))..))))).........(((((.......))))) ( -23.60) >DroGri_CAF1 39614 82 + 1 ------------------AGUGUACAGUGUGCAAUGUGCAAUGUGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUCUGAGCCAGCAA ------------------(((((((((((((((((.....)).)))))))).....((((...))))))))))).........((((.....)))).... ( -28.30) >DroEre_CAF1 9017 87 + 1 AA--------AACCGAAAAA-----CCCCAACCGUGUGCAGUGCGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGUUA ..--------........((-----(.((....((((((.....)))))).........((((((((.((..........)).)))))))).))..))). ( -18.70) >DroYak_CAF1 5703 87 + 1 AA--------AACCGUAAAA-----CCCUAACCAUGUGCAGUGCGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGUUA ..--------........((-----((((..((((((..(((((((..........((((...))))))))))).....)).)))).....)))..))). ( -16.00) >DroMoj_CAF1 46830 77 + 1 ------------------GG-----GCUGUGCAGUGUGCAAUGUGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGCUA ------------------.(-----(((((..(((((((.....)))))))........((((((((.((..........)).))))))))..)))))). ( -26.90) >consensus __________________AA_____CCCGAACAAUGUGCAAUGUGCGCACUAAUUACGACAAGGUCGGUGCACUAAUUAACAAUGGCUUUGAGGCAGCUA .............................(((..(((((.....)))))..........((((((((.((..........)).)))))))).....))). (-13.95 = -13.78 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:33 2006