Locus 7196

Sequence ID X_DroMel_CAF1
Location 18,015,020 – 18,015,138
Length 118
Max. P 0.864740
window11758

overview

Window 8

Location 18,015,020 – 18,015,138
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.00
Mean single sequence MFE -44.36
Consensus MFE -31.75
Energy contribution -32.68
Covariance contribution 0.93
Combinations/Pair 1.07
Mean z-score -2.12
Structure conservation index 0.72
SVM decision value 0.84
SVM RNA-class probability 0.864740
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18015020 118 - 22224390
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGGCCACGAGCCAUGGGCCAUGGGCUCAAGCUAAAGCUCAGGCCAACGGAUGUC-GAUGUG-AAUGUGGAAUAUGGUCUGGCUGCAAACAA
((..(((........((((((....(((((..((((((.((...((((.((((((........))))))))))...))...))-).)).)-..)))))....))))))))).))...... ( -43.40)
>DroSec_CAF1 2399 112 - 1
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGGCCACGAGCCAUAGGCCAUGGGCUCAAGCUCAAGCUCAGGCUAAGGGAUGUG--------GAUGUGGAAUAUGGCCUGGCUGCAAACAA
((..(((........((((((....(((((..(((((..((...((((.((((((........))))))))))...)).))))--------).)))))....))))))))).))...... ( -46.60)
>DroSim_CAF1 3661 118 - 1
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGGCCACGAGCCAUGGGCCAUGGGCUCAAGCUCAAGCUCAGGCCAAGGGAUGUG-GAUGUG-GAUGUGGAAUAUGGCCUGGCUGCAAACAA
(((.(((...(((((...(((((..(((((..(((((..((...((((.((((((........))))))))))...)).))))-).))))-).)))))))))))))..)))......... ( -49.60)
>DroEre_CAF1 2379 92 - 1
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGUC--------------CGUGGGCUCAAACUCAAGCUGGGGCCAAUGGA--------------UGUGGAAUAUGGCCUGGCUGCAAACAA
((..(((........((((((....(((((.((--------------(((.(((((...(....)...))))).)))))--------------)))))....))))))))).))...... ( -37.10)
>DroYak_CAF1 2624 113 - 1
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGGCCACCAGC-------CAUGGGCUCAAGCUCAAGCUCAGGCCAAGGGAUGUGGGAUGUGGGAUGUGGAAUAUGGCCUGGCUGCAAACAA
(((.(((...(((((...(((((..(((((..((((...(-------(...((((..(((....)))..))))...))..))))..)))))..)))))))))))))..)))......... ( -45.10)
>consensus
GCCUGCCUCGAUAUUGGGCCACAAGCCACGGGCCACGAGCCAU_GGCCAUGGGCUCAAGCUCAAGCUCAGGCCAAGGGAUGUG_GAUGUG_GAUGUGGAAUAUGGCCUGGCUGCAAACAA
((..(((........((((((....(((((((((..........))))...((((..(((....)))..))))....................)))))....))))))))).))...... (-31.75 = -32.68 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:32 2006