Locus 7195

Sequence ID X_DroMel_CAF1
Location 18,014,441 – 18,014,536
Length 95
Max. P 0.582916
window11757

overview

Window 7

Location 18,014,441 – 18,014,536
Length 95
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 88.78
Mean single sequence MFE -23.95
Consensus MFE -17.73
Energy contribution -18.48
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.74
SVM decision value 0.10
SVM RNA-class probability 0.582916
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18014441 95 - 22224390
--------------AAUUCCUUCUGGCUUCUUGCCUUUGUGCCUUGUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC
--------------.......((((..(((((((.....(((((((.((............))))))-)))((....)))))).)))..))))................. ( -25.00)
>DroSec_CAF1 1798 95 - 1
--------------GAUUCCUUCUCGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC
--------------((((((.....((.....))..(((((.(((.(((((..((.....))...))-)))...))).))))).)))))).................... ( -20.80)
>DroSim_CAF1 3058 95 - 1
--------------GAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG-GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC
--------------((((((....(((.....))).(((((.(((.(((((..((.....))...))-)))...))).))))).)))))).................... ( -24.20)
>DroYak_CAF1 1821 110 - 1
GAUGCCUGAUGCCUGAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGACGGGGGCGGAAAAAUCGCAAUGGAAUCUGAUUUUUGCCUCUUUUCUC
((.((..((.....((((((....(((.....))).(((((.(((.(((((.(((.....)))...)))))...))).))))).))))))....))..)).))....... ( -25.80)
>consensus
______________GAUUCCUUCUGGCUUCUUGCCUUUGUGCUUUAUGCUCAUCAUCAUUUGCCGGG_GCAGAGAAAUCGCAAUGGAAUCAGAUUUUUGCCUCUUUUCUC
..............((((((..(((((....((....((.((.....)).))....))...)))))..((.((....))))...)))))).................... (-17.73 = -18.48 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:31 2006