| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,011,213 – 18,011,308 |
| Length | 95 |
| Max. P | 0.984665 |
| Location | 18,011,213 – 18,011,308 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18011213 95 + 22224390 AUCUGUAUCUUUAGA--UAUAGUAUCUGUAUCUGUAGCAGGGGCAGGCGUUUUAUUGUUUAUUUGCCCGCCGCUUUG-CCUUUUGUUAUUCGCCAGAA---------------------- ..(((((((....))--)))))..((((.....((((((((((((((((..................))))....))-)).))))))))....)))).---------------------- ( -25.37) >DroSec_CAF1 22676 117 + 1 AUCUGUAUCUUUAGA--UAUAGUAUCUGUAUCUGUAGCAGGGGCAGGCGUUUUAUUGUUUAUUUGCCCGCCGCUUUG-CCUUUUGUUAUUCGCCAGAAUUUUUAUUAUUUACUAUAUUUA ...........((((--(((((((((((.....((((((((((((((((..................))))....))-)).))))))))....))))............))))))))))) ( -25.87) >DroYak_CAF1 10558 120 + 1 AUCUGUAUCUUUAGAAAUAUAGUAUCUGUAUCUGUAGCUGGGGCAGGCGUUUUAUUGUUUAUUUGCCCGCCGCUUUUGUUAUUUGUUAUUCGCCAGAAUUUUUAUUAUUUACUAUAUUUA .((((......))))(((((((((...(((.......(((((((.((((..(........)..)))).)))((....)).............))))......)))....))))))))).. ( -24.72) >consensus AUCUGUAUCUUUAGA__UAUAGUAUCUGUAUCUGUAGCAGGGGCAGGCGUUUUAUUGUUUAUUUGCCCGCCGCUUUG_CCUUUUGUUAUUCGCCAGAAUUUUUAUUAUUUACUAUAUUUA .((((...((.((((..(((((...))))))))).))..(.(((.((((..(........)..)))).))).)....................))))....................... (-18.23 = -18.23 + -0.00)
| Location | 18,011,213 – 18,011,308 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.26 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.11 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18011213 95 - 22224390 ----------------------UUCUGGCGAAUAACAAAAGG-CAAAGCGGCGGGCAAAUAAACAAUAAAACGCCUGCCCCUGCUACAGAUACAGAUACUAUA--UCUAAAGAUACAGAU ----------------------.((((.............((-((..(.(((((((................)))))))).))))..(((((.((...)).))--))).......)))). ( -22.09) >DroSec_CAF1 22676 117 - 1 UAAAUAUAGUAAAUAAUAAAAAUUCUGGCGAAUAACAAAAGG-CAAAGCGGCGGGCAAAUAAACAAUAAAACGCCUGCCCCUGCUACAGAUACAGAUACUAUA--UCUAAAGAUACAGAU ...((((((((..........((((....)))).......((-((..(.(((((((................)))))))).))))...........)))))))--).............. ( -22.89) >DroYak_CAF1 10558 120 - 1 UAAAUAUAGUAAAUAAUAAAAAUUCUGGCGAAUAACAAAUAACAAAAGCGGCGGGCAAAUAAACAAUAAAACGCCUGCCCCAGCUACAGAUACAGAUACUAUAUUUCUAAAGAUACAGAU .((((((((((..........((((....)))).............((((((((((................)))))))...)))...........)))))))))).............. ( -22.89) >consensus UAAAUAUAGUAAAUAAUAAAAAUUCUGGCGAAUAACAAAAGG_CAAAGCGGCGGGCAAAUAAACAAUAAAACGCCUGCCCCUGCUACAGAUACAGAUACUAUA__UCUAAAGAUACAGAU .......................((((...................((((((((((................)))))))...)))........(((.........))).......)))). (-17.26 = -17.26 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:30 2006