Locus 7190

Sequence ID X_DroMel_CAF1
Location 18,008,935 – 18,009,048
Length 113
Max. P 0.692576
window11745

overview

Window 5

Location 18,008,935 – 18,009,048
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -38.05
Consensus MFE -34.04
Energy contribution -33.85
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value 0.33
SVM RNA-class probability 0.692576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18008935 113 + 22224390
GCCAUUAGCUGCUAUGGCCAGUCACACGUGGCGUAUGCGCAAUCAACGGAGACAGCUACAUGGCGAUUACAUGGAUU-------UGGCCCCAAACGUAACGUAUACGCAGCGUUAGCACA
((.....(((((...((((((.....(((((((....)))((((...(....).(((....))))))).))))...)-------)))))......(((.....))))))))....))... ( -35.30)
>DroSec_CAF1 20398 113 + 1
GCCAUUAGCUGCUAUGGCCAGUCACACGUGGCGUAUGCGCAAUCAACGGAGACAGCUACAUGGCGAUUACAUGGAUU-------UGGCCCCAAACGUAACGUAUACGCAGCGUUGGCACA
((((...(((((...((((((.....(((((((....)))((((...(....).(((....))))))).))))...)-------)))))......(((.....))))))))..))))... ( -41.30)
>DroEre_CAF1 21257 120 + 1
GCCAUUAGCUGCUAUGGCCAGUCACACGUGGCGUAUGCGCAAUCAGCGGAGACAGCUACAUGGCGAUUACAUGGAUUACAUGGAUGGCCCCAAACGUAACGUAUACGCAGCGUAAGCACA
(((((........)))))..((...((((.(((((((((.....((((....).)))....(((.(((.((((.....))))))).)))..........))))))))).))))..))... ( -40.30)
>DroYak_CAF1 8132 113 + 1
GCCAUUAGCUGCUAUGGCCAGUCACACGUGGCGUAUGCGCAAUCAACGGAGACAGCUACAUGGCGAUUACAUGGAUU-------UGGCCCCAAACGUAACGUAUACGCAGCGUAAGCACA
((.....(((((...((((((.....(((((((....)))((((...(....).(((....))))))).))))...)-------)))))......(((.....))))))))....))... ( -35.30)
>consensus
GCCAUUAGCUGCUAUGGCCAGUCACACGUGGCGUAUGCGCAAUCAACGGAGACAGCUACAUGGCGAUUACAUGGAUU_______UGGCCCCAAACGUAACGUAUACGCAGCGUAAGCACA
((.....(((((...((((((((.(.(((.(((....))).....)))).))).....((((.......))))...........)))))......(((.....))))))))....))... (-34.04 = -33.85 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:21 2006