Locus 7189

Sequence ID X_DroMel_CAF1
Location 18,006,196 – 18,006,316
Length 120
Max. P 0.686468
window11744

overview

Window 4

Location 18,006,196 – 18,006,316
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.49
Mean single sequence MFE -25.40
Consensus MFE -25.00
Energy contribution -25.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.98
SVM decision value 0.32
SVM RNA-class probability 0.686468
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18006196 120 - 22224390
GUGGGGGGCGUGAGAAAGCGGGAGAUUCAGUAUUUAUAGAUAGUCAUCGGAAUAGUAAAACGGUUGACUGGUUUAUUGAAAAAUCAAUGCAAUAAUAAAGCUGAACCGCAUAUAGAAUAG
((((....(((......))).....((((((.(((((...(((((((((...........))).))))))(((((((((....)))))).))).)))))))))))))))........... ( -25.40)
>DroEre_CAF1 18663 119 - 1
GGGUGGGGCGUGAGAAAGCGGG-AAUUCAGUAUUUAUAGAUAGUCAUCGGAAUAGUAAAACGGUUGACUGGUUUAUUGAAAAAUCAAUGCAAUAAUAAAGCUGAACCGCAUAUAGAAUAG
........(....)...((((.-..((((((.(((((...(((((((((...........))).))))))(((((((((....)))))).))).)))))))))))))))........... ( -25.40)
>DroYak_CAF1 5422 118 - 1
GGG-GGGGCGUGAGAAAGCGGG-GAUUCAGUAUUUAUAGAUAGUCAUCGGAAUAGUAAAACGGUUGACUGGUUUAUUGAAAAAUCAAUGCAAUAAUAAAGCUGAACCGCAUAUAGAAUAG
...-....(....)...((((.-..((((((.(((((...(((((((((...........))).))))))(((((((((....)))))).))).)))))))))))))))........... ( -25.40)
>consensus
GGG_GGGGCGUGAGAAAGCGGG_GAUUCAGUAUUUAUAGAUAGUCAUCGGAAUAGUAAAACGGUUGACUGGUUUAUUGAAAAAUCAAUGCAAUAAUAAAGCUGAACCGCAUAUAGAAUAG
........(....)...((((....((((((.(((((...(((((((((...........))).))))))(((((((((....)))))).))).)))))))))))))))........... (-25.00 = -25.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:20 2006