Locus 7188

Sequence ID X_DroMel_CAF1
Location 18,004,605 – 18,004,711
Length 106
Max. P 0.909675
window11743

overview

Window 3

Location 18,004,605 – 18,004,711
Length 106
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 92.98
Mean single sequence MFE -16.63
Consensus MFE -14.90
Energy contribution -15.23
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.90
SVM decision value 1.07
SVM RNA-class probability 0.909675
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18004605 106 + 22224390
AAUAAUGGAAAAACAAAACGAAGA--------AAAAAAUGUCGAAAGAUAAAUAAACUAAUACUAAUUUUAAAUUAAAUCGAAUGGCGCGGAGGCGCAAAUCAAUUUUUGAAGC
..................((((((--------......((((....))))..............................((...((((....))))...))..)))))).... ( -16.10)
>DroSec_CAF1 16319 114 + 1
AAUAAUGGAAAAACAAAAAGAUGAAAAAACGAAAAAAAAGUCGAAAGAUAAAUAAACUAAUACUAAUUUUAAAUUAAAUCGAGUGGCGCGGAGGCGCAAAUCAAUUUUUGAAGC
.............((((((..(((...............(((....)))...........((((...((((...))))...))))((((....))))...))).)))))).... ( -16.90)
>DroSim_CAF1 5219 114 + 1
AAUAAUGGAAAAACAAAAAGAUGAAAAAACGAAAAAAAAGUCGAAAGAUAAAUAAACUAAUACUAAUUUUAAAUUAAAUCGAGUGGCGCGGAGGCGCAAAUCAAUUUUUGAAGC
.............((((((..(((...............(((....)))...........((((...((((...))))...))))((((....))))...))).)))))).... ( -16.90)
>consensus
AAUAAUGGAAAAACAAAAAGAUGAAAAAACGAAAAAAAAGUCGAAAGAUAAAUAAACUAAUACUAAUUUUAAAUUAAAUCGAGUGGCGCGGAGGCGCAAAUCAAUUUUUGAAGC
.............((((((....................(((....)))...............................((...((((....))))...))..)))))).... (-14.90 = -15.23 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:19 2006