| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,001,843 – 18,001,956 |
| Length | 113 |
| Max. P | 0.697253 |
| Location | 18,001,843 – 18,001,956 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.08 |
| Mean single sequence MFE | -32.03 |
| Consensus MFE | -26.67 |
| Energy contribution | -27.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18001843 113 - 22224390 AAACAUAAAUCGAGUGGAGG-GGC---G---AGGUUGGGUGCAAGGCGGAAAAUUAACUUAAUUAACCGUUUGACUUAAAUGAAUUGGCCACGCUCAGGUGGCCAAUUUACACACACACA .............(((...(-...---.---...((((((.((((.(((..(((((...)))))..))))))))))))).((((((((((((......)))))))))))))...)))... ( -31.40) >DroEre_CAF1 14518 109 - 1 AAACAUAAAUCGAGUGGGGG-----------AGUUCGGGUGCAAGGCGGAAAAUUAACUUAAUUAACCGUUUGACUUAAAUGAAUUGGCCACGCUCAGGUGGCCAAUUUACACACACACA .............(((....-----------.(((..(((.((((.(((..(((((...)))))..))))))))))..)))(((((((((((......))))))))))).)))....... ( -30.70) >DroYak_CAF1 1289 117 - 1 AAACAUAAAUCGAGAGGGGGUGGCAAUGGGGAGU---GGUGCAAGGCGGAAAAUUAACUUAAUUAACCGUUUGACUUAAAUGAAUUGGCCACGCUCAGGUGGCCAAUUUACACACACACA ...(((...((....))..)))..........((---((((..((((((..(((((...)))))..))))))........((((((((((((......))))))))))))))).)))... ( -34.00) >consensus AAACAUAAAUCGAGUGGGGG_GGC___G___AGUU_GGGUGCAAGGCGGAAAAUUAACUUAAUUAACCGUUUGACUUAAAUGAAUUGGCCACGCUCAGGUGGCCAAUUUACACACACACA .............(((....................((((.((((.(((..(((((...)))))..)))))))))))...((((((((((((......)))))))))))))))....... (-26.67 = -27.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:16 2006