Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,997,616 – 17,997,713 |
Length | 97 |
Max. P | 0.665282 |
Location | 17,997,616 – 17,997,713 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 95.19 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -27.29 |
Energy contribution | -26.63 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.97 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17997616 97 - 22224390 GAGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGACAAAUAUUGACGCAGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... ( -28.00) >DroSec_CAF1 9656 97 - 1 GAGGGUUAGUUUAAUGUCCCAUUGAUUGGGAUGUCAAUGGACAGGACAAAUAUUGGCGCCGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(((((.......(((((.((((((......)))))))))))((((((.(.(((((....))))).)....))))))....))))).......... ( -30.10) >DroEre_CAF1 10534 97 - 1 GGGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGGCAAAUAUUGACGCAGGCCGGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... ( -26.40) >consensus GAGGGUUAGUUUAAUGUCCAAUUGAUUGGCAUGUCAAUGGACAGGACAAAUAUUGACGCAGGCCAGCAGAAAUUGUUCAUACGACCCGUUGGCAAUA ..(.((((((....(((((..((.(((((....))))).))..)))))...)))))).)..((((((.(...((((....)))).).)))))).... (-27.29 = -26.63 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:11 2006