Locus 7182

Sequence ID X_DroMel_CAF1
Location 17,996,501 – 17,996,599
Length 98
Max. P 0.999895
window11733

overview

Window 3

Location 17,996,501 – 17,996,599
Length 98
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 70.00
Mean single sequence MFE -27.70
Consensus MFE -16.82
Energy contribution -15.93
Covariance contribution -0.88
Combinations/Pair 1.14
Mean z-score -2.51
Structure conservation index 0.61
SVM decision value 4.42
SVM RNA-class probability 0.999895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17996501 98 + 22224390
UUGAGCUUGGCUAAA--AAAGCGUUGGCAUU-----------------CCGAAGGAUAUUAUAGCCCAAGCUAUAAACU---UGGCUGUAAAUCGGAAUGCUUAAGUUCUAGACAUCAAA
..((((((((((...--..)))...((((((-----------------((((......((((((((.(((.......))---))))))))).)))))))))))))))))........... ( -32.40)
>DroSec_CAF1 8580 117 + 1
UUGAGCUUGGCUAAAAAAAAGCGUUGGCAUUUCAGUGGCAUAGAUAUUUCGAAGGAUAUUAUAGCCCGAGCUAUAAACU---UGGCUAUAAAUCAGUACGCUUAAGUUCUAGAAAUCAAG
..(((((((..........(((((((.(((....))).))..(((...((....))..((((((((.(((.......))---))))))))))))...))))))))))))........... ( -25.80)
>DroEre_CAF1 9432 102 + 1
UUUAGCUUGGCUAAA--A-AACGUUGGCUUUUCAGUGGCAUAG---------------UUAUAGCUCGAGCACUAAACUGAUUGGCUAUAAAUAAGAUCGCUAAAAUGCCAGAAAUCAAA
((((((...))))))--.-....(((((.(((.((((((.((.---------------(((((((.(((.((......)).)))))))))).)).).))))).))).)))))........ ( -24.90)
>consensus
UUGAGCUUGGCUAAA__AAAGCGUUGGCAUUUCAGUGGCAUAG______CGAAGGAUAUUAUAGCCCGAGCUAUAAACU___UGGCUAUAAAUCAGAACGCUUAAGUUCUAGAAAUCAAA
((((((...(((((.........)))))..............................((((((((..((.......))....))))))))........))))))............... (-16.82 = -15.93 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:10 2006