| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,994,957 – 17,995,077 |
| Length | 120 |
| Max. P | 0.971838 |
| Location | 17,994,957 – 17,995,077 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -21.93 |
| Energy contribution | -21.93 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17994957 120 + 22224390 AAUACUUAUGGCAAACUUUUGAAUAACCGAAACAAAAGCAACUACAAAAAUUGCAAAGUAAAACGAACUUGCGCAGCGCAAAAAAGUUUGCCACUAAAAAGCAAUAGCAGUCAAGUGCAA ..(((((.((((((((((((.................((((.........))))..............(((((...))))))))))))))))).......((....))....)))))... ( -25.00) >DroSec_CAF1 6995 120 + 1 AAUACUUAUGGCAAACUUUUGAAUAACCGAAACAAAAGCAACUACAAAAAUUGCAAAGUAAAACGAACUUGGGCAGCGCAAAAAAGUUUGCCACUAAAAAGCAAUAGCAGUCAAGUGCAA ..(((((.((((((((((((......((.........((((.........)))).((((.......))))))((...))..)))))))))))).......((....))....)))))... ( -23.40) >DroEre_CAF1 7901 118 + 1 AAUACUUAUGGCAAACUUUUGAAUAACCGAAACAAAAGCAACUACAAAAAUUGCAAAGUAAAACGAACUUGCGCAG--CAAAAAAGUUUGCCACUAAAAGGCAAUAGCAGUCAAGUGCAA ..(((((.((((((((((((.................((((.........))))..............((((...)--)))))))))))))))......(((.......))))))))... ( -22.90) >consensus AAUACUUAUGGCAAACUUUUGAAUAACCGAAACAAAAGCAACUACAAAAAUUGCAAAGUAAAACGAACUUGCGCAGCGCAAAAAAGUUUGCCACUAAAAAGCAAUAGCAGUCAAGUGCAA ..(((((.(((((((((((((......)......................((((.((((.......))))..)))).....)))))))))))).......((....))....)))))... (-21.93 = -21.93 + 0.00)
| Location | 17,994,957 – 17,995,077 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -26.17 |
| Energy contribution | -26.17 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.955339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17994957 120 - 22224390 UUGCACUUGACUGCUAUUGCUUUUUAGUGGCAAACUUUUUUGCGCUGCGCAAGUUCGUUUUACUUUGCAAUUUUUGUAGUUGCUUUUGUUUCGGUUAUUCAAAAGUUUGCCAUAAGUAUU ..(((......)))...(((((....((((((((((((((((((...)))))..(((....((...((((((.....))))))....))..)))......)))))))))))))))))).. ( -30.10) >DroSec_CAF1 6995 120 - 1 UUGCACUUGACUGCUAUUGCUUUUUAGUGGCAAACUUUUUUGCGCUGCCCAAGUUCGUUUUACUUUGCAAUUUUUGUAGUUGCUUUUGUUUCGGUUAUUCAAAAGUUUGCCAUAAGUAUU ..(((......)))...(((((....(((((((((((((.......(((.((((.......)))).((((((.....)))))).........))).....)))))))))))))))))).. ( -27.50) >DroEre_CAF1 7901 118 - 1 UUGCACUUGACUGCUAUUGCCUUUUAGUGGCAAACUUUUUUG--CUGCGCAAGUUCGUUUUACUUUGCAAUUUUUGUAGUUGCUUUUGUUUCGGUUAUUCAAAAGUUUGCCAUAAGUAUU ....(((((...((((........))))(((((((((((...--..((....))(((....((...((((((.....))))))....))..)))......))))))))))).)))))... ( -27.40) >consensus UUGCACUUGACUGCUAUUGCUUUUUAGUGGCAAACUUUUUUGCGCUGCGCAAGUUCGUUUUACUUUGCAAUUUUUGUAGUUGCUUUUGUUUCGGUUAUUCAAAAGUUUGCCAUAAGUAUU ....((((....((....))......(((((((((((((.......((....))(((....((...((((((.....))))))....))..)))......)))))))))))))))))... (-26.17 = -26.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:09 2006