Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,977,465 – 1,977,705 |
Length | 240 |
Max. P | 0.726733 |
Location | 1,977,465 – 1,977,585 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -51.27 |
Consensus MFE | -48.98 |
Energy contribution | -49.21 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -1.51 |
Structure conservation index | 0.96 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1977465 120 + 22224390 AGUUUGCGGCCGGUUGUCUUUGAGUCGGGUGCGCUUGGCGAUCUGCUGCUGAGCGGUAGUAGUGGGUGGCGCCGUCUGAUUGAUGGCGUUCCGACUGACCCACGUGCUGCCUUAGAGCUG ((((((((.(((..(.......)..))).)))(((..(((......)))..)))((((((((((((((((((((((.....))))))))).......)))))).)))))))...))))). ( -56.61) >DroSec_CAF1 10490 120 + 1 AGUUUGCGGCCGGUUGUCCUUGAGUCGCGUGUACUUGGCGAUCUGCUGCUGAGCGGCAGUAGUGGGUGGCGCCGUCUGAUUGAUGGCGUUCCGACUGACCCACGUGCUACCUUAGAGCUG (((((((((((((......))).)))))((((((.(((.(..(((((((...)))))))((((.((.(((((((((.....))))))))))).)))).)))).)))).))....))))). ( -49.50) >DroYak_CAF1 10566 120 + 1 AGUUUGCGGCCGGUUGUCUUCGAGUUGGGUGUGCUUGGCGAUCUGCAGCUGAGCGGCAGUAGUGGGUGGCGCCGUCUGAUGGAUGGCGUUCCGGCUGAUCCACGUGCAGCCUUAGAACUG (((((((.(((((((((......((..((....))..)).....))))))).)).)).......((.(((((((((.....)))))))))))(((((.........)))))...))))). ( -47.70) >consensus AGUUUGCGGCCGGUUGUCUUUGAGUCGGGUGUGCUUGGCGAUCUGCUGCUGAGCGGCAGUAGUGGGUGGCGCCGUCUGAUUGAUGGCGUUCCGACUGACCCACGUGCUGCCUUAGAGCUG ((((((((((.(((((((...((((.......))))))))))).))))).....((((((((((((((((((((((.....))))))))).......)))))).)))))))...))))). (-48.98 = -49.21 + 0.23)
Location | 1,977,545 – 1,977,665 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -38.89 |
Energy contribution | -38.90 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.90 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1977545 120 - 22224390 CUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCCCAGCUCUAAGGCAGCACGUGGGUCAGUCGGAACGCCAUCA ....((((((((....)....(((.....)))))))))).((((((((..(((((((....)))))))..((((...((...(((....))).))...))))...))))))..))..... ( -43.60) >DroSec_CAF1 10570 120 - 1 CUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCCCAGCUCUAAGGUAGCACGUGGGUCAGUCGGAACGCCAUCA ....((((((((....)....(((.....)))))))))).((((((((..(((((((....))))))).........(((((((((....).)))...)))))..))))))..))..... ( -42.70) >DroYak_CAF1 10646 120 - 1 CUAAGGUGCCUGGAAACACUCGCCCAGAAGGCGGGCAUCAGCUUCGACGAGGACUUUACCAAGAGUCCAUCCCAAUCGCCCAGUUCUAAGGCUGCACGUGGAUCAGCCGGAACGCCAUCC ....((((..((....))..))))..((.(((((((.((......))...(((((((....))))))).........)))).(((((..(((((.........))))))))))))).)). ( -43.00) >consensus CUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCCCAGCUCUAAGGCAGCACGUGGGUCAGUCGGAACGCCAUCA ....((((((((....)....(((.....)))))))))).((((((((..(((((((....)))))))..((((...((...(((....))).))...))))...))))))..))..... (-38.89 = -38.90 + 0.01)
Location | 1,977,585 – 1,977,705 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -39.02 |
Energy contribution | -39.13 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.97 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1977585 120 - 22224390 AAAGGUCAACUCCACCACUCGCGUGGACCCCCAGCGGCCACUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCC ...(((.......)))....((((((.((......))))))...((((((((....)....(((.....)))))))))).))..(((.(((((((((....))))))).))....))).. ( -38.20) >DroSec_CAF1 10610 120 - 1 AAAGGGCAACUACAACACUGGCGUGGACCCCCAGCGGCCACUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCC ...(((.............(((((((.((......))))))...((((((((....)....(((.....)))))))))).))).......(((((((....)))))))..)))....... ( -41.30) >DroYak_CAF1 10686 120 - 1 AAAGGGUAACUCCAACACUCGCGUGGACCCCCAGCGGCCACUAAGGUGCCUGGAAACACUCGCCCAGAAGGCGGGCAUCAGCUUCGACGAGGACUUUACCAAGAGUCCAUCCCAAUCGCC ...(((..............((((((.((......))))))...((((((((....))..((((.....)))))))))).))........(((((((....)))))))..)))....... ( -41.10) >consensus AAAGGGCAACUCCAACACUCGCGUGGACCCCCAGCGGCCACUAAGGUGCCUGGAAACACUCGCCCAGAAGGCAGGCAUCAGCUUCGACGAGGACUUUGCCAAGAGUCCAUCCCAAUCGCC ...(((..............((((((.((......))))))...((((((((....)....(((.....)))))))))).))........(((((((....)))))))..)))....... (-39.02 = -39.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:58 2006