Locus 7178

Sequence ID X_DroMel_CAF1
Location 17,992,594 – 17,992,714
Length 120
Max. P 0.537312
window11726

overview

Window 6

Location 17,992,594 – 17,992,714
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -35.11
Consensus MFE -30.79
Energy contribution -30.66
Covariance contribution -0.13
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.88
SVM decision value 0.01
SVM RNA-class probability 0.537312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17992594 120 + 22224390
AAAAGUGUUGCAUGCUCGCGGGCUAAACGCGAGAUGAACACGCAGCUGAAGGAUAAAAAGGAGGCGGCUGGCUCAAGAGGGGGAGUGGCUGAUGAAGGAGGAGGCGGGGGCGGGCAAGAC
....((.((((...((((((.......)))))).......(((..(((..............(((.(((..(((....)))..))).)))..............)))..))).)))).)) ( -35.29)
>DroSec_CAF1 4661 120 + 1
AAAAGUGUUGCAUGCUCGCGGGCUAAACGCGAGAUGAACACGCAGCUGAAGGAUAAAAAGGAGGCGGCUGGCUCAAGAGGGGGAGUGGCCGAGGCAGCAGGGGGCGGGGGUGGGCAAGAC
....(((((.(((.((((((.......))))))))))))))((.(((...............(((.(((..(((....)))..))).)))......((.....))...)))..))..... ( -37.40)
>DroSim_CAF1 3099 120 + 1
AAAAGUGUUGCAUGCUCGCGGGCUAAACGCGAGAUGAACACGCAGCUGAAGGAUAAAAAGGAGGCGGCUGGCUCAAGAGGGGGAGUGGCCGAGGCAGCAGGGGGCGGGGGUGGGCAAGAC
....(((((.(((.((((((.......))))))))))))))((.(((...............(((.(((..(((....)))..))).)))......((.....))...)))..))..... ( -37.40)
>DroEre_CAF1 5642 114 + 1
AAAAGUGUUGCAUGCUCGCGGGCUAAACGCGAGAUGAACACGCAGCUGAAGGAUAAAAAGGAGGCGGUUGGCUCAAGAGGGGGUGUGGCCGAGGGAGGAGAGUGCGGGG------AAGAC
....(((((.(((.((((((.......))))))))))))))((((((...............)))(((((((((......)))).)))))............)))....------..... ( -30.36)
>consensus
AAAAGUGUUGCAUGCUCGCGGGCUAAACGCGAGAUGAACACGCAGCUGAAGGAUAAAAAGGAGGCGGCUGGCUCAAGAGGGGGAGUGGCCGAGGCAGCAGGGGGCGGGGGUGGGCAAGAC
....(((((.(((.((((((.......))))))))))))))....(((..............(((.(((..(((....)))..))).)))..............)))............. (-30.79 = -30.66 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:04 2006