| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,985,221 – 17,985,328 |
| Length | 107 |
| Max. P | 0.575384 |
| Location | 17,985,221 – 17,985,328 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.20 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -21.38 |
| Energy contribution | -21.88 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17985221 107 + 22224390 ACAACUGCCACUCGACACCCAUUGUGGCAUAAAAAAAUUAUGCAAAUGAAUGGGCCACGCAGGUUCGGGGGAGCCGCUAACGAUGCUAACCAUGGAAAAAAGUUGA-------------A .(((((.(((((((...((((((...((((((.....)))))).....))))))...)).)).....((..(((..(....)..)))..)).))).....))))).-------------. ( -29.90) >DroSim_CAF1 16742 106 + 1 ACAACUGCCACUCGACACCCCUUGUGGCAUAAA-AAAUUAUGCAAAUGAAUGGGCCUCGCAGGUUCGGGGGAGCCGCUAACGAUGCUAACCAUCGAAAAAAGUUGG-------------A .(((((((..(((....((((.....((((((.-...))))))........(((((.....))))))))))))..))...(((((.....))))).....))))).-------------. ( -31.50) >DroEre_CAF1 17051 106 + 1 ACAACAGCCACUCGACACCCCUUGUGGCAUAAA-AAAUUAUGCAAAUAAAUGGGCUUCGCAGGAUGGGGGAAGCCGCUAACGAUGCUAACCAUGGAAAAAAGUUGG-------------A .((((..((((((((..(((.((...((((((.-...)))))).....)).)))..))).))..)))((..(((..(....)..)))..))..........)))).-------------. ( -27.10) >DroYak_CAF1 15531 118 + 1 ACAACUGCCACUCGACACCCCUUGUGGCAUAAA-AAAUUAUGCAAAUGAAUGGGCUUCGCAGGUUUGGGGUAGCCGCUAACGAUGCUAACCAUG-AAAAAAGUUGGUGGGGGGGUGGGAA .......((((((...(((((.....((((((.-...))))))....((((..((...))..)))))))))..((((((((.............-......))))))))..))))))... ( -35.41) >consensus ACAACUGCCACUCGACACCCCUUGUGGCAUAAA_AAAUUAUGCAAAUGAAUGGGCCUCGCAGGUUCGGGGGAGCCGCUAACGAUGCUAACCAUGGAAAAAAGUUGG_____________A .((((((((......(((.....)))((((((.....)))))).........)))...(((.(((.(((....)).).)))..)))..............)))))............... (-21.38 = -21.88 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:02 2006