Locus 7174

Sequence ID X_DroMel_CAF1
Location 17,983,371 – 17,983,490
Length 119
Max. P 0.813507
window11720

overview

Window 0

Location 17,983,371 – 17,983,490
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.82
Mean single sequence MFE -35.22
Consensus MFE -27.10
Energy contribution -27.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.77
SVM decision value 0.66
SVM RNA-class probability 0.813507
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17983371 119 + 22224390
CCUCCCAUCCCACCACCACGUACCCCUAUGUCCACAUGCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUUUGGGG-CCAGGGAU
..((((.(((((...((((...((((...((..((.....))..)).))))...((((....))))........(((((.....)))))..........))))...)))))-...)))). ( -37.40)
>DroSim_CAF1 14032 111 + 1
CC---------CCCUCCACGUACCCCUAUGUCCACAUGCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUUUGGGGUCCAGGGAU
..---------((((....(.(((((....(((((....((((......(((.((....))..)))........(((((.....)))))..))))....)))))...))))).))))).. ( -33.90)
>DroEre_CAF1 15104 105 + 1
C-----UU----ACCCCACAUACCCCUAAGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGGU-GGGG-UCGA----
(-----((----(((((((...((((..(((..((.....))..)))))))...((((....))))........(((((.....)))))..........)))))))-))).-....---- ( -36.80)
>DroYak_CAF1 13404 107 + 1
C-----------CCCACACUUACCCCUAUGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUU-GGGG-CCGGUGCU
.-----------....((((..((((....(((((..((........))(((..((((....))))........(((((.....)))))))).......)))))..-))))-..)))).. ( -32.80)
>consensus
C___________CCCCCACGUACCCCUAUGUCCACAUCCUGUAAACUGGGGCCAGGCAACUUUGCCAAUAAUAAAGCGCCAUUAGUGCUGCUACAUAAAGUGGGUU_GGGG_CCAGGGAU
......................((((....(((((....((((......(((.((....))..)))........(((((.....)))))..))))....)))))...))))......... (-27.10 = -27.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:59 2006