Locus 7173

Sequence ID X_DroMel_CAF1
Location 17,982,995 – 17,983,104
Length 109
Max. P 0.615912
window11719

overview

Window 9

Location 17,982,995 – 17,983,104
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.80
Mean single sequence MFE -34.73
Consensus MFE -25.81
Energy contribution -25.50
Covariance contribution -0.31
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.74
SVM decision value 0.17
SVM RNA-class probability 0.615912
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17982995 109 + 22224390
UGGGGCUG--CGGGUCCAAAGUAAUCUUCAGUCUCAGUGUCGGGCACAACGAUUGAGAUUCUCAUUUUUAUACUCAUUCCCGGGGGGCAUCGAUUUU-UGUCCCCACCUCUC--------
.((((...--((((.....((((((((.(((((...(((.....)))...)))))))))...........))))....))))(((((((........-))))))).))))..-------- ( -34.40)
>DroSim_CAF1 13670 109 + 1
UGGGACUG--CGGGUCCAAAGUAAUCUUCAGUCUCAGUGUCGGGCACAACGAUUGAGAUUCUCAUUUUUAUACUCAUUCCCGGGGGGCAUCGAUUUU-UGUCUCCACCUCCC--------
.((((...--((((.....((((((((.(((((...(((.....)))...)))))))))...........))))....))))(((((((........-)))))))...))))-------- ( -31.50)
>DroEre_CAF1 14776 108 + 1
UGGGGCUA--UGGGUCCAAAGUAAUCUUCAGUCUCAGUGUCGGGCGCAGCGAUUGAGAUUCUCAUUUUUAUACUCAUUCCCGG-GGGCAUCGAUUUU-UGUCCCCACCUCCC--------
..(((..(--(((((..((((((((((.(((((.(.(((.....))).).))))))))))...)))))...)))))).)))((-(((((........-))))))).......-------- ( -35.60)
>DroYak_CAF1 13028 119 + 1
UGGAGCGAAGUGGGUACAAAGUAAUCUUCAGUCUCAGUGUCGGGCGCAACGAUUGAGAUUCUCAUUUUUAUACUCAUUCCCGG-GGGCAUCGAUUUUGUGUCCCCACCUCCCAACGUUCU
.((((((.((((((((.((((.(((((.(((((...(((.....)))...)))))))))).....)))).))))))))...((-((((((.......)))))))).........)))))) ( -37.40)
>consensus
UGGGGCUA__CGGGUCCAAAGUAAUCUUCAGUCUCAGUGUCGGGCACAACGAUUGAGAUUCUCAUUUUUAUACUCAUUCCCGG_GGGCAUCGAUUUU_UGUCCCCACCUCCC________
.((((.....((((.....((((((((.(((((...(((.....)))...)))))))))...........))))....))))(((((((.........)))))))..))))......... (-25.81 = -25.50 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:58 2006