Locus 7172

Sequence ID X_DroMel_CAF1
Location 17,982,258 – 17,982,378
Length 120
Max. P 0.709178
window11718

overview

Window 8

Location 17,982,258 – 17,982,378
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.97
Mean single sequence MFE -30.80
Consensus MFE -25.99
Energy contribution -26.55
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.37
SVM RNA-class probability 0.709178
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17982258 120 - 22224390
UAAUAUUAUGUUGUAAUUAACUUUGAACUUUAGCUACCGACAUAUGCUCCGUGAAAGGUGACCACAAAAAACUAGGGGAAAACCGAAUUACAGAGCGUACGUGCGUAGAUUGCCUCAAGU
.........((((....))))(((((.......(((((.((.(((((((.((((..(((..((............))....)))...)))).))))))).))).))))......))))). ( -24.82)
>DroSec_CAF1 13166 118 - 1
UAAUAUUAUGUUGUAAUUAACUUUGACCUUUAGUUAGCGACAUAUGCUCGGUGAAAGGUGACCACAAGAA--UAGGGGAAAACCGAAUUACCGAGCGUACGUGCGUAGAUUGCCUCAAGU
........((..((((((.((..((((.....))))((.((.((((((((((((..(((..((.(.....--..)))....)))...)))))))))))).)))))).))))))..))... ( -34.50)
>DroSim_CAF1 12887 118 - 1
UAAUAUUAUGUUGUAAUUAACUUUGAGCUUUAGUUAGCGACAUAUGCUCGGUGAAAGGUGACCACAAGAA--UAGGGGAAAACCGAAUUACCGAGCGUACGUGCGUAGAUUGCCUCAAGU
.........((((....))))((((((...(((((.(((((.((((((((((((..(((..((.(.....--..)))....)))...)))))))))))).)).))).))))).)))))). ( -35.60)
>DroYak_CAF1 12331 119 - 1
GAAUAUAAUGUUGCGAUGAACUUAAAGCUUUAAUUUGCGACAUAUGCUCGAUCGAAGGUGACCACAAAAAAACAGGGG-AAACCGAAUUACCGAGCGUACGUGCGUAGAUUGCCUCAAGU
...................((((...((...((((((((((.((((((((......(....).............((.-...)).......)))))))).)).))))))))))...)))) ( -28.30)
>consensus
UAAUAUUAUGUUGUAAUUAACUUUGAGCUUUAGUUAGCGACAUAUGCUCGGUGAAAGGUGACCACAAAAA__UAGGGGAAAACCGAAUUACCGAGCGUACGUGCGUAGAUUGCCUCAAGU
........((..((((((((((.........)))))(((((.((((((((((((..(((..((............))....)))...)))))))))))).)).)))..)))))..))... (-25.99 = -26.55 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:57 2006