Locus 7171

Sequence ID X_DroMel_CAF1
Location 17,982,086 – 17,982,178
Length 92
Max. P 0.984450
window11716 window11717

overview

Window 6

Location 17,982,086 – 17,982,178
Length 92
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 90.85
Mean single sequence MFE -26.60
Consensus MFE -21.16
Energy contribution -21.47
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.80
SVM decision value 0.19
SVM RNA-class probability 0.627133
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17982086 92 + 22224390
GUGCCGCUGGCUUGGCAUAUGAUUGUGUAAUUGAUUUGAUCAAUAGAAAGCCAGAGUCGGCCGAGAGUGCGGGUG----------AAAGUGGAAAAUUUGCU
...((((((((((.(((((....))))).((((((...))))))...)))))....(((.(((......))).))----------).))))).......... ( -25.70)
>DroSec_CAF1 12994 100 + 1
GUGCCGCUGGCUUGGCAUAUGAUUGUGUAAUUGAUUUGAUCA-UAGA-AGCCAGAGUCGGCCGAGAGAGUGGGUGAGAGUAGUGGAAAGUGGAAAAUUUGCU
..((((((((((((((.((((((((.((.....)).))))))-))..-.)))).)))))))(....)....)))......((..((...(....).))..)) ( -26.00)
>DroSim_CAF1 12713 102 + 1
GUGCCGCUGGCUUGGCAUAUGAUUGUGUAAUUGAUUUGAUCAAUAGAAAGCCAGAGUCGGCCGAGAGAGUGGGUGAGAGUAGUGGAAAGUGGAAAAUUUGCU
(.(((((((((((.(((((....))))).((((((...))))))...)))))))...))))).....((..(((.....((.(....).))....)))..)) ( -25.20)
>DroYak_CAF1 12149 102 + 1
GUGCCGCUGGCUUGGCAUAUGAUUGUGUAAUUGAUUUGAUCAAUAGAAAGCCGGAGUCGGCGGCGAGUGAGGGUGAAAGUAGUGGAAAGUGGAAAAUUUGCU
.(((((((((((((((((((....)))).((((((...)))))).....))).))))))))))))...............((..((...(....).))..)) ( -29.50)
>consensus
GUGCCGCUGGCUUGGCAUAUGAUUGUGUAAUUGAUUUGAUCAAUAGAAAGCCAGAGUCGGCCGAGAGAGUGGGUGAGAGUAGUGGAAAGUGGAAAAUUUGCU
..(((((((((((.(((((....))))).((((((...))))))...)))))))...))))..........................((..((...))..)) (-21.16 = -21.47 +   0.31)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 17,982,086 – 17,982,178
Length 92
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 90.85
Mean single sequence MFE -17.06
Consensus MFE -14.81
Energy contribution -15.31
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.61
Structure conservation index 0.87
SVM decision value 1.97
SVM RNA-class probability 0.984450
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17982086 92 - 22224390
AGCAAAUUUUCCACUUU----------CACCCGCACUCUCGGCCGACUCUGGCUUUCUAUUGAUCAAAUCAAUUACACAAUCAUAUGCCAAGCCAGCGGCAC
.................----------..............((((...(((((((..(((((((...............)))).)))..))))))))))).. ( -17.06)
>DroSec_CAF1 12994 100 - 1
AGCAAAUUUUCCACUUUCCACUACUCUCACCCACUCUCUCGGCCGACUCUGGCU-UCUA-UGAUCAAAUCAAUUACACAAUCAUAUGCCAAGCCAGCGGCAC
.........................................((((...((((((-(.((-((((...............))))))....))))))))))).. ( -18.06)
>DroSim_CAF1 12713 102 - 1
AGCAAAUUUUCCACUUUCCACUACUCUCACCCACUCUCUCGGCCGACUCUGGCUUUCUAUUGAUCAAAUCAAUUACACAAUCAUAUGCCAAGCCAGCGGCAC
.........................................((((...(((((((..(((((((...............)))).)))..))))))))))).. ( -17.06)
>DroYak_CAF1 12149 102 - 1
AGCAAAUUUUCCACUUUCCACUACUUUCACCCUCACUCGCCGCCGACUCCGGCUUUCUAUUGAUCAAAUCAAUUACACAAUCAUAUGCCAAGCCAGCGGCAC
......................................(((((.(....)(((((..(((((((...............)))).)))..))))).))))).. ( -16.06)
>consensus
AGCAAAUUUUCCACUUUCCACUACUCUCACCCACACUCUCGGCCGACUCUGGCUUUCUAUUGAUCAAAUCAAUUACACAAUCAUAUGCCAAGCCAGCGGCAC
.........................................((((...(((((((.....((((...............))))......))))))))))).. (-14.81 = -15.31 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:56 2006