Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,980,753 – 17,980,852 |
Length | 99 |
Max. P | 0.768107 |
Location | 17,980,753 – 17,980,852 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -16.98 |
Energy contribution | -17.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.78 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17980753 99 + 22224390 GC---UUCCAACCAGCUUCCAUGGGCACUG--C----------------CUUCCUCUGUUCCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCAACUUUUCGUUGGCCCAUUGAAUUC ((---(.......)))(((.((((((..((--(----------------(................)))).......((((.......))))..((((.....)))))))))).)))... ( -21.79) >DroSec_CAF1 11611 99 + 1 GC---UUCCAUCCAGCUUCCAUGGGCACUGUUC----------------CUUCCU--CUUCCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCAACUUUUCGUUGGCCCAUUGAAUUC ((---(.......)))(((.((((((.......----------------......--..........((((....))))...............((((.....)))))))))).)))... ( -19.10) >DroSim_CAF1 11328 99 + 1 GC---UUCCAUCCAGCUUCCAUGGGCACUGUUC----------------CUUCCU--GUUCCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCAACUUUUCGUUGGCCCAUUGAAUUC ((---(.......)))(((.((((((..((((.----------------...((.--((....)).))..))))...((((.......))))..((((.....)))))))))).)))... ( -19.80) >DroEre_CAF1 12768 97 + 1 GC---UUCCAUCCAGCUUCCAUGGGCCCUG--C----------------CUUCCU--GUUCCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCCACUUCUCGUUGGCCCAUUGAAUAC ((---(.......)))(((.(((((((.((--(----------------(.....--.........)))).......((((.......))))..............))))))).)))... ( -22.24) >DroYak_CAF1 10716 116 + 1 GCAGCAUCCAUCCAGCUUCCAUGGGUCCUG--CUAUCCUGCCGUCCUGUCGUCCU--GUUUCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCAACUUUUUGUUGGCCCAUUGAAUUC ((((.((((((.........)))))).)))--)......................--......((..(((((.(.(((((.(........).))))).).)))))..))........... ( -25.30) >consensus GC___UUCCAUCCAGCUUCCAUGGGCACUG__C________________CUUCCU__GUUCCUGCUGGCAAACACUUGCAACUUUUAUUUGCUGCAACUUUUCGUUGGCCCAUUGAAUUC ................(((.((((((.........................................((((....))))...............((((.....)))))))))).)))... (-16.98 = -17.02 + 0.04)
Location | 17,980,753 – 17,980,852 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -20.88 |
Energy contribution | -20.96 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.80 |
Structure conservation index | 0.77 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17980753 99 - 22224390 GAAUUCAAUGGGCCAACGAAAAGUUGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGGAACAGAGGAAG----------------G--CAGUGCCCAUGGAAGCUGGUUGGAA---GC ...(((.(((((((.......(.(((((((........))))))).)...((((..(..........)..)----------------)--))).)))))).)))(((.......)---)) ( -26.20) >DroSec_CAF1 11611 99 - 1 GAAUUCAAUGGGCCAACGAAAAGUUGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGGAAG--AGGAAG----------------GAACAGUGCCCAUGGAAGCUGGAUGGAA---GC ...(((.(((((((..((((.(.(((((((........))))))).).))))((....))...--......----------------.....).)))))).)))(((.......)---)) ( -25.20) >DroSim_CAF1 11328 99 - 1 GAAUUCAAUGGGCCAACGAAAAGUUGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGGAAC--AGGAAG----------------GAACAGUGCCCAUGGAAGCUGGAUGGAA---GC ...(((.(((((((..((((.(.(((((((........))))))).).))))((....))...--......----------------.....).)))))).)))(((.......)---)) ( -25.20) >DroEre_CAF1 12768 97 - 1 GUAUUCAAUGGGCCAACGAGAAGUGGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGGAAC--AGGAAG----------------G--CAGGGCCCAUGGAAGCUGGAUGGAA---GC ...(((.(((((((...........(((((........)))))......(((((..(......--..)..)----------------)--)))))))))).)))(((.......)---)) ( -29.10) >DroYak_CAF1 10716 116 - 1 GAAUUCAAUGGGCCAACAAAAAGUUGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGAAAC--AGGACGACAGGACGGCAGGAUAG--CAGGACCCAUGGAAGCUGGAUGGAUGCUGC ....((.(((((((.........(((((((........)))))))((.((((((.(......)--.(..(....)..)))))))...)--).)).))))).))(((.........))).. ( -29.90) >consensus GAAUUCAAUGGGCCAACGAAAAGUUGCAGCAAAUAAAAGUUGCAAGUGUUUGCCAGCAGGAAC__AGGAAG________________G__CAGUGCCCAUGGAAGCUGGAUGGAA___GC ...(((.(((((((..((((.(.(((((((........))))))).).))))((............))........................).)))))).)))................ (-20.88 = -20.96 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:54 2006