Locus 7164

Sequence ID X_DroMel_CAF1
Location 17,974,633 – 17,974,753
Length 120
Max. P 0.919813
window11704

overview

Window 4

Location 17,974,633 – 17,974,753
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.72
Mean single sequence MFE -25.72
Consensus MFE -25.02
Energy contribution -24.82
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.30
Structure conservation index 0.97
SVM decision value 1.13
SVM RNA-class probability 0.919813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17974633 120 + 22224390
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGCCGGGCGUACGGAGCGUAUACGUCAUCGUUCACGCGUCGCCACAAAAACAAAAAACAAAA
........(((........)))..(((((.(((((((...((....)).))))).)).)))))((((.((...((((..(((....)))..))))))))))................... ( -27.00)
>DroSec_CAF1 5562 108 + 1
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGCCGGGCGUACGGAGCGUAUACGUCAUCGUUCACGCGUUGCCACAAAA------------A
........(((........)))..(((((.(((((((...((....)).))))).)).)))))((((......((((..(((....)))..))))..))))......------------. ( -25.20)
>DroSim_CAF1 5247 108 + 1
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGCCGGGCGUACGGAGCGUAUACGUCAUCGUUCACGCGUCGCCACAAAA------------A
........(((........)))..(((((.(((((((...((....)).))))).)).)))))((((.((...((((..(((....)))..))))))))))......------------. ( -27.00)
>DroEre_CAF1 7303 106 + 1
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGUCGGGCGUUUGGACCGUAUACGUCAUCGUUCACGCGUCGCCACAAA--------------
........(((........)))...((((((((......)))))............(((....))).....((((((..(((....)))..))).)))))).....-------------- ( -24.20)
>DroYak_CAF1 4671 106 + 1
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGCCGGGCGUACGGAGCGUAUACGUCAUCGUUCACGCGUUGCCACAAA--------------
........(((........)))..(((((.(((((((...((....)).))))).)).)))))((((......((((..(((....)))..))))..)))).....-------------- ( -25.20)
>consensus
AAAUCAAAGAUAACGACUCAUCAACGGCGUCAUAAAAACGUGACAUCAAUUUUAUUGCCGCCGGGCGUACGGAGCGUAUACGUCAUCGUUCACGCGUCGCCACAAAA____________A
........(((........)))..(((((.(((((((...((....)).))))).)).)))))((((......((((..(((....)))..))))..))))................... (-25.02 = -24.82 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:44 2006